Information for CAZyme ID: AYM54441.1
Basic Information
| GenBank ID | AYM54441.1 |
| Family | CBM13 |
| Sequence Length | 896 |
| UniProt ID | A0A3S5GYI5(100,100) |
| Average pLDDT? | 59.92 |
| CAZy50 ID | 19677 |
| CAZy50 Rep | Yes, AYM54441.1 |
| Structure Cluster | SC_CBM13_clus285 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 525924 |
| Kingdom | Bacteria |
| Phylum | Myxococcota |
| Class | |
| Order | Polyangiales |
| Family | Phaselicystidaceae |
| Genus | Phaselicystis |
| Species | Phaselicystis flava |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MGIWDDFVDF GEETANTVSG GVTSAFNDVA NGVTSAASAV ESWGAGAVST AGNGIVEAYQ | 60 |
| QTEGAVIYAV SWSQGSAGTV QSWTSQATGQ VVGFGIDAYN HVKPWAMEAW RLLSGYLRSA | 120 |
| PPRLGPHDDT ARDFIHAVLA AFMGGQLGLA ESVVKSWESD ARSKGYTMAI DFRGTITFAS | 180 |
| FAVSGVTGVY VDKGGRWGFF ADFGVGAEII PSSTASVNMD LWMIFGGVSA YAKTYYKAGG | 240 |
| EIWIQGFVVG GDVLLTSGFD FAGFRAAIGV GVDWAIFGSP DVRPTPHTGP SGVAPSLPSL | 300 |
| DVYSVSLVPE QATTYTAACQ VARNPPAESS VLASAFAAAT GRSPTLFATA QYGGSGGDAF | 360 |
| ADEVGSVARI TGLTLLYTEH VNQITTTYLR HDGSSRSAVH GTAVAGSRSV TIALEPGEWI | 420 |
| TEITGRCGKL LDRISITTNL RTFGPFGGAD GSEFAIRSLP MQPIVGLFGR SGQKIDAIGA | 480 |
| FYQTGLACTL TAQHSEMCLA PAGEAMGGEA VLPPTAEGAK AAQMRWNGSE SRQWTLVPVA | 540 |
| KGAYYVVQKS SGLHLTGGAK GASPELRPLD GSPAQQWSLM TVAGAPGHYA LRNMQSGLVL | 600 |
| GVAGAATGEG AAIVLEERQR TAEQPFVPSQ QWKIDGVPAR VYLYTEGGFS GRFQTLAPGA | 660 |
| HDIGSLRVGN DRVASVRVPA GFRVTLFRDA GFSGPTSILT GDAASLGSMS GQTSSVRVEM | 720 |
| PPWGVTAFTA TGYGGASQTF VPGKYDRPGL LVGDNTLGSA KIPAGWRLTL FDGEGFRGQM | 780 |
| AWYTSADGSA LEVPDLGPIR GKTSSLVVEA APLGQASVFT GTSFQGSAQG FGPGRYNMSA | 840 |
| IALGNDRIRS VKVPPGWTVV LYEHKDFEGA TKTLTSSVYD LKDWKDKASS LVVIPG | 896 |
Predicted 3D structure by AlphaFold2 with pLDDT = 59.92 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MGIWDDFVDF GEETANTVSG GVTSAFNDVA NGVTSAASAV ESWGAGAVST AGNGIVEAYQ | 60 |
| QTEGAVIYAV SWSQGSAGTV QSWTSQATGQ VVGFGIDAYN HVKPWAMEAW RLLSGYLRSA | 120 |
| PPRLGPHDDT ARDFIHAVLA AFMGGQLGLA ESVVKSWESD ARSKGYTMAI DFRGTITFAS | 180 |
| FAVSGVTGVY VDKGGRWGFF ADFGVGAEII PSSTASVNMD LWMIFGGVSA YAKTYYKAGG | 240 |
| EIWIQGFVVG GDVLLTSGFD FAGFRAAIGV GVDWAIFGSP DVRPTPHTGP SGVAPSLPSL | 300 |
| DVYSVSLVPE QATTYTAACQ VARNPPAESS VLASAFAAAT GRSPTLFATA QYGGSGGDAF | 360 |
| ADEVGSVARI TGLTLLYTEH VNQITTTYLR HDGSSRSAVH GTAVAGSRSV TIALEPGEWI | 420 |
| TEITGRCGKL LDRISITTNL RTFGPFGGAD GSEFAIRSLP MQPIVGLFGR SGQKIDAIGA | 480 |
| FYQTGLACTL TAQHSEMCLA PAGEAMGGEA VLPPTAEGAK AAQMRWNGSE SRQWTLVPVA | 540 |
| KGAYYVVQKS SGLHLTGGAK GASPELRPLD GSPAQQWSLM TVAGAPGHYA LRNMQSGLVL | 600 |
| GVAGAATGEG AAIVLEERQR TAEQPFVPSQ QWKIDGVPAR VYLYTEGGFS GRFQTLAPGA | 660 |
| HDIGSLRVGN DRVASVRVPA GFRVTLFRDA GFSGPTSILT GDAASLGSMS GQTSSVRVEM | 720 |
| PPWGVTAFTA TGYGGASQTF VPGKYDRPGL LVGDNTLGSA KIPAGWRLTL FDGEGFRGQM | 780 |
| AWYTSADGSA LEVPDLGPIR GKTSSLVVEA APLGQASVFT GTSFQGSAQG FGPGRYNMSA | 840 |
| IALGNDRIRS VKVPPGWTVV LYEHKDFEGA TKTLTSSVYD LKDWKDKASS LVVIPG | 896 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.