CAZyme3D

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Entry ID

Information for CAZyme ID: AYM53394.1

Basic Information

GenBank IDAYM53394.1
FamilyCBM11, GH16_21
Sequence Length457
UniProt IDA0A3Q8I365(100,100)Download
Average pLDDT?88.39
CAZy50 ID78361
CAZy50 RepYes, AYM53394.1
Structure ClusterSC_CBM11_clus4, SC_GH16_clus287
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID394094
KingdomBacteria
PhylumMyxococcota
ClassMyxococcia
OrderMyxococcales
FamilyArchangiaceae
GenusCystobacter
SpeciesCystobacter velatus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAHDSKWKRM  ALALLLTACG  SNGTPDGDDP  GGDGNTGGGD  PPGGQTPSGP  PPPIQLGAPP60
SLEWREGYSA  FNEPFDALDL  GRWRPSDGWA  NSGDFNAGWR  ADHAVVTDGR  LDLILDTATC120
STGGCSGRPY  ASGEVATQRY  YGHGRYEVRM  KPVRTPGTMT  AFAITTGPAE  STRSDAIDLA180
ILGQNTKALR  LNYITNGQRH  DLGVNLPFDA  ADDFHTYGIE  WTRDAIHWYV  DDQRIHSETG240
HKGALPSVPG  RALVNFWPGN  PGSTASWMGR  FTYPGSPLVV  SVEHLRYSPA  APVELLESFE300
TPEQAALWVR  TVGPGASLTA  RQSNQGHQGK  SLYLDYTTSA  TAYAYTARTF  SEPQDWTGVR360
YLNFWFRGYQ  TGNRFRVELR  DNGPSADAAE  RFESLFQDDF  KGWKWVSVPL  TAFTRRTDGQ420
PTGAPEDGLT  LSGVWGLAFQ  PLAGNNEAFI  DDIELER457

Predicted 3D structure by AlphaFold2 with pLDDT = 88.39 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MAHDSKWKRM  ALALLLTACG  SNGTPDGDDP  GGDGNTGGGD  PPGGQTPSGP  PPPIQLGAPP60
SLEWREGYSA  FNEPFDALDL  GRWRPSDGWA  NSGDFNAGWR  ADHAVVTDGR  LDLILDTATC120
STGGCSGRPY  ASGEVATQRY  YGHGRYEVRM  KPVRTPGTMT  AFAITTGPAE  STRSDAIDLA180
ILGQNTKALR  LNYITNGQRH  DLGVNLPFDA  ADDFHTYGIE  WTRDAIHWYV  DDQRIHSETG240
HKGALPSVPG  RALVNFWPGN  PGSTASWMGR  FTYPGSPLVV  SVEHLRYSPA  APVELLESFE300
TPEQAALWVR  TVGPGASLTA  RQSNQGHQGK  SLYLDYTTSA  TAYAYTARTF  SEPQDWTGVR360
YLNFWFRGYQ  TGNRFRVELR  DNGPSADAAE  RFESLFQDDF  KGWKWVSVPL  TAFTRRTDGQ420
PTGAPEDGLT  LSGVWGLAFQ  PLAGNNEAFI  DDIELER457

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH16_21(74-285)+CBM11(304-455)

MAHDSKWKRM  ALALLLTACG  SNGTPDGDDP  GGDGNTGGGD  PPGGQTPSGP  PPPIQLGAPP60
SLEWREGYSA  FNEPFDALDL  GRWRPSDGWA  NSGDFNAGWR  ADHAVVTDGR  LDLILDTATC120
STGGCSGRPY  ASGEVATQRY  YGHGRYEVRM  KPVRTPGTMT  AFAITTGPAE  STRSDAIDLA180
ILGQNTKALR  LNYITNGQRH  DLGVNLPFDA  ADDFHTYGIE  WTRDAIHWYV  DDQRIHSETG240
HKGALPSVPG  RALVNFWPGN  PGSTASWMGR  FTYPGSPLVV  SVEHLRYSPA  APVELLESFE300
TPEQAALWVR  TVGPGASLTA  RQSNQGHQGK  SLYLDYTTSA  TAYAYTARTF  SEPQDWTGVR360
YLNFWFRGYQ  TGNRFRVELR  DNGPSADAAE  RFESLFQDDF  KGWKWVSVPL  TAFTRRTDGQ420
PTGAPEDGLT  LSGVWGLAFQ  PLAGNNEAFI  DDIELER457

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help