CAZyme3D

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Entry ID

Information for CAZyme ID: AYK06634.1

Basic Information

GenBank IDAYK06634.1
FamilyCE4, GH171
Sequence Length706
UniProt IDA0A838XD74(98.7,100)Download
Average pLDDT?84.24
CAZy50 ID37936
CAZy50 RepYes, AYK06634.1
Structure ClusterSC_CE4_clus162, SC_GH171_clus15
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1465
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusBrevibacillus
SpeciesBrevibacillus laterosporus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRKGILFLTC  LIMLMFVSDR  NSYANPPSIR  LGDDVLISKY  HHLIDGKRIG  LVTNQTGINS60
QGQSIIDVLA  KYHNATLAAL  YGPEHGIDGQ  ARAGAYVESY  IHKDWNIPVY  SLYGKTRKPT120
ANMLKNIDVL  VFDLQDIGAR  SYTYISTLHD  VMEAAREHKK  PLIVLDRPNP  LGGKIVDGPV180
QTPPYLSFVG  VDELPLAHGM  TIGELAQFFN  RKMGVHLTII  PMDYYARGMI  FQDTGLKWVK240
SSPQVPNLAS  VFGYLATGLG  EGIGLQHSDN  FKWVGAEGIH  ANQLAKMLND  ADLPGVVFVP300
ETKGFAGGVR  LQIIDYHAFN  PARTGMYVLA  YANQLTSSVM  KNQDKRFNSD  QFDKIMGSSE360
LRKALARKAS  PEELEALYAP  MVNSFKMERL  PYLIYEDIGK  EYMGAIVDSG  KKVTVEPKPD420
TTSPEPTPEP  KPKPESKPEP  NTTEPVTKPN  PKPDVTTPVP  GTETKPNLNP  NPTTSGQKPD480
TTATKPVSSQ  KVAHLTFDDG  PSNVTVQILD  VLKQHNIKAT  FFVLGRNVKG  NEAILRRMLA540
EGHTIGNHTH  SHDYNKIYKN  PQAFFTDLKQ  SEAEIQKITG  EKPTMIRFPG  GSNNGVSKKA600
QDTTIYGANK  WVMNDIVKEV  KNQGYTYFDW  NVSSGDARSN  SYTPQEVIRN  VKNGSANKHE660
VVILMHDTKA  KESTLKALPQ  VIADLKKQGF  TFEALQPTSK  TVQFLK706

Predicted 3D structure by AlphaFold2 with pLDDT = 84.24 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRKGILFLTC  LIMLMFVSDR  NSYANPPSIR  LGDDVLISKY  HHLIDGKRIG  LVTNQTGINS60
QGQSIIDVLA  KYHNATLAAL  YGPEHGIDGQ  ARAGAYVESY  IHKDWNIPVY  SLYGKTRKPT120
ANMLKNIDVL  VFDLQDIGAR  SYTYISTLHD  VMEAAREHKK  PLIVLDRPNP  LGGKIVDGPV180
QTPPYLSFVG  VDELPLAHGM  TIGELAQFFN  RKMGVHLTII  PMDYYARGMI  FQDTGLKWVK240
SSPQVPNLAS  VFGYLATGLG  EGIGLQHSDN  FKWVGAEGIH  ANQLAKMLND  ADLPGVVFVP300
ETKGFAGGVR  LQIIDYHAFN  PARTGMYVLA  YANQLTSSVM  KNQDKRFNSD  QFDKIMGSSE360
LRKALARKAS  PEELEALYAP  MVNSFKMERL  PYLIYEDIGK  EYMGAIVDSG  KKVTVEPKPD420
TTSPEPTPEP  KPKPESKPEP  NTTEPVTKPN  PKPDVTTPVP  GTETKPNLNP  NPTTSGQKPD480
TTATKPVSSQ  KVAHLTFDDG  PSNVTVQILD  VLKQHNIKAT  FFVLGRNVKG  NEAILRRMLA540
EGHTIGNHTH  SHDYNKIYKN  PQAFFTDLKQ  SEAEIQKITG  EKPTMIRFPG  GSNNGVSKKA600
QDTTIYGANK  WVMNDIVKEV  KNQGYTYFDW  NVSSGDARSN  SYTPQEVIRN  VKNGSANKHE660
VVILMHDTKA  KESTLKALPQ  VIADLKKQGF  TFEALQPTSK  TVQFLK706

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(49-395)+CE4(489-597)

MRKGILFLTC  LIMLMFVSDR  NSYANPPSIR  LGDDVLISKY  HHLIDGKRIG  LVTNQTGINS60
QGQSIIDVLA  KYHNATLAAL  YGPEHGIDGQ  ARAGAYVESY  IHKDWNIPVY  SLYGKTRKPT120
ANMLKNVDVL  VFDLQDIGAR  SYTYISTLHD  VMEAAREHKK  PLIVLDRPNP  LGGKIVDGPV180
QTPPHLSFVG  VDELPLAHGM  TIGELAQFFN  RKMGVHLTII  PMDYYARGMI  FQDTGLKWVK240
SSPQVPNLAS  VFGYLATGLG  EGIGLQHSDN  FKWVGAEGIH  ANQLAKMLND  ADLPGVVFVP300
ETKGFAGGVR  LQIIDYHAFN  PARTGMYVLA  YANQLTSSVM  KNQDKRFNSD  QFDKIMGSSE360
LRKALARKAS  PEELEALYAP  MVNSFKMERL  PYLIYEDIGK  EYMGAIVDSG  KKVTVEPKPD420
TTSPEPTPEP  KPKPESKPEP  NTTKPVTKPN  PKPDVTTPVP  GTETKPNPNP  NPTTSGQKPD480
TTATKPVSSQ  KVAHLTFDDG  PSNVTVQILD  VLKQHNIKAT  FFVLGRNVKG  NEAILRRMLA540
EGHTIGNHTH  SHDYNKIYKN  PQAFFTDLKQ  SEAEIQKITG  EKPTMIRFPG  GSNNGVSKKA600
QDTTIYGANK  WVMNDIVKEV  KNQGYTYFDW  NVSSGDARSN  SYTPQEVIRN  VKNGSANKHE660
VVILMHDTKA  KESTLKALPQ  VIADLKKQGF  TFEALQPTSK  TVQFLK706

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help