CAZyme3D

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Entry ID

Information for CAZyme ID: AYF97337.1

Basic Information

GenBank IDAYF97337.1
FamilyCBM35, GH87
Sequence Length969
UniProt IDA0A387B4V1(100,100)Download
Average pLDDT?86.00
CAZy50 ID15737
CAZy50 RepYes, AYF97337.1
Structure ClusterSC_CBM35_clus39, SC_GH87_clus10
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2419774
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusProtaetiibacter
SpeciesProtaetiibacter intestinalis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSTRVTGIPR  FISAAAVAAL  AASVLAVASP  AAADDALEYE  AEDAALFGGA  GINSDHLGYS60
GTGFVDGFVI  DHQGTAGVTF  TVDVPEEGEY  GLNLRYANGL  GTDMTLSQVI  GDEDRQITLP120
SAVGAGWSQW  FVHQETVQLP  AGEQEITFRF  DADDTGNVNL  DAIALTTVGD  LGTPGGGATD180
PGEVPGAGPD  TRWDDVTRSL  ATRSAPRGGE  VYEAEDAFSA  NGAVNADGGI  DLAADRARLV240
VTTFARDARA  QLVTIRYRNT  GPDAARLVLG  TDGLPLGTVT  LPRGSGWREL  AVSIPLRAGL300
GTLELRRTGD  ARTGALVVDA  VRLQRGEAPA  ERGATLGVSS  YEAEQGLTSG  EVLAESRAFH360
DLAAEASGRQ  AVVLSDRGDD  VAWTLREPAD  ALVLRASIPD  TADGAGQYGT  LALYAGTRKV420
ADVPVTSRYS  WVYGAYPYGN  DPAQGGAQRF  FDETRVAFAK  LPAGTTLRLV  KTAASGSIDY480
TVDLVETELR  AAAFTRPAGY  LDVRDYGATA  GDGADDTGAI  QAAVDAASAA  GTGVWVPKGT540
FTLTGLVRLA  DVAIRGAGPW  YSVLEGRSGK  GGLYGMGTGV  TIADLMIAGD  NRHRDDRTAD600
SGIAGTFGQG  SLVQNVWIEH  TKTGLWVDPG  TDGFLATGLR  VRDSYADGVH  LHGAVTDARV660
EQSSVRNTGD  DGMAMWSAGG  AVTRGVFAHN  TVQSPLLGNG  AAIYGGDSNR  ISDSVISDTL720
TASAGIAVST  RFNPVPFSGT  TVVSGNDIFR  GGGWEPNWST  SFGGIWVFAD  TSHITTPVVV780
ERTRIVDSSY  EGILVSGSHW  VNDLRVSEVI  IEGTGSYAVA  ARVGGDHRFR  DVRVSGVTEP840
ADARNHLWGT  FIDEGGNTGL  LAAETATCSV  SVRAIPTVAG  RYVATVTLRN  AGTAALPASS900
LSWHAGSGES  ALLGLGASVS  QNGTRVEAEL  GDATLRAGRS  LTFLVYGTAN  AKRIAEPDAF960
TLDGVRCRG969

Predicted 3D structure by AlphaFold2 with pLDDT = 86.00 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSTRVTGIPR  FISAAAVAAL  AASVLAVASP  AAADDALEYE  AEDAALFGGA  GINSDHLGYS60
GTGFVDGFVI  DHQGTAGVTF  TVDVPEEGEY  GLNLRYANGL  GTDMTLSQVI  GDEDRQITLP120
SAVGAGWSQW  FVHQETVQLP  AGEQEITFRF  DADDTGNVNL  DAIALTTVGD  LGTPGGGATD180
PGEVPGAGPD  TRWDDVTRSL  ATRSAPRGGE  VYEAEDAFSA  NGAVNADGGI  DLAADRARLV240
VTTFARDARA  QLVTIRYRNT  GPDAARLVLG  TDGLPLGTVT  LPRGSGWREL  AVSIPLRAGL300
GTLELRRTGD  ARTGALVVDA  VRLQRGEAPA  ERGATLGVSS  YEAEQGLTSG  EVLAESRAFH360
DLAAEASGRQ  AVVLSDRGDD  VAWTLREPAD  ALVLRASIPD  TADGAGQYGT  LALYAGTRKV420
ADVPVTSRYS  WVYGAYPYGN  DPAQGGAQRF  FDETRVAFAK  LPAGTTLRLV  KTAASGSIDY480
TVDLVETELR  AAAFTRPAGY  LDVRDYGATA  GDGADDTGAI  QAAVDAASAA  GTGVWVPKGT540
FTLTGLVRLA  DVAIRGAGPW  YSVLEGRSGK  GGLYGMGTGV  TIADLMIAGD  NRHRDDRTAD600
SGIAGTFGQG  SLVQNVWIEH  TKTGLWVDPG  TDGFLATGLR  VRDSYADGVH  LHGAVTDARV660
EQSSVRNTGD  DGMAMWSAGG  AVTRGVFAHN  TVQSPLLGNG  AAIYGGDSNR  ISDSVISDTL720
TASAGIAVST  RFNPVPFSGT  TVVSGNDIFR  GGGWEPNWST  SFGGIWVFAD  TSHITTPVVV780
ERTRIVDSSY  EGILVSGSHW  VNDLRVSEVI  IEGTGSYAVA  ARVGGDHRFR  DVRVSGVTEP840
ADARNHLWGT  FIDEGGNTGL  LAAETATCSV  SVRAIPTVAG  RYVATVTLRN  AGTAALPASS900
LSWHAGSGES  ALLGLGASVS  QNGTRVEAEL  GDATLRAGRS  LTFLVYGTAN  AKRIAEPDAF960
TLDGVRCRG969

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH87(37-840)+CBM2(868-967)

MSTRVTGIPR  FISAAAVAAL  AASVLAVASP  AAADDALEYE  AEDAALFGGA  GINSDHLGYS60
GTGFVDGFVI  DHQGTAGVTF  TVDVPEEGEY  GLNLRYANGL  GTDMTLSQVI  GDEDRQITLP120
SAVGAGWSQW  FVHQETVQLP  AGEQEITFRF  DADDTGNVNL  DAIALTTVGD  LGTPGGGATD180
PGEVPGAGPD  TRWDDVTRSL  ATRSAPRGGE  VYEAEDAFSA  NGAVNADGGI  DLAADRARLV240
VTTFARDARA  QLVTIRYRNT  GPDAARLVLG  TDGLPLGTVT  LPRGSGWREL  AVSIPLRAGL300
GTLELRRTGD  ARTGALVVDA  VRLQRGEAPA  ERGATLGVSS  YEAEQGLTSG  EVLAESRAFH360
DLAAEASGRQ  AVVLSDRGDD  VAWTLREPAD  ALVLRASIPD  TADGAGQYGT  LALYAGTRKV420
ADVPVTSRYS  WVYGAYPYGN  DPAQGGAQRF  FDETRVAFAK  LPAGTTLRLV  KTAASGSIDY480
TVDLVETELR  AAAFTRPAGY  LDVRDYGATA  GDGADDTGAI  QAAVDAASAA  GTGVWVPKGT540
FTLTGLVRLA  DVAIRGAGPW  YSVLEGRSGK  GGLYGMGTGV  TIADLMIAGD  NRHRDDRTAD600
SGIAGTFGQG  SLVQNVWIEH  TKTGLWVDPG  TDGFLATGLR  VRDSYADGVH  LHGAVTDARV660
EQSSVRNTGD  DGMAMWSAGG  AVTRGVFAHN  TVQSPLLGNG  AAIYGGDSNR  ISDSVISDTL720
TASAGIAVST  RFNPVPFSGT  TVVSGNDIFR  GGGWEPNWST  SFGGIWVFAD  TSHITTPVVV780
ERTRIVDSSY  EGILVSGSHW  VNDLRVSEVI  IEGTGSYAVA  ARVGGDHRFR  DVRVSGVTEP840
ADARNHLWGT  FIDEGGNTGL  LAAETATCSV  SVRAIPTVAG  RYVATVTLRN  AGTAALPASS900
LSWHAGSGES  ALLGLGASVS  QNGTRVEAEL  GDATLRAGRS  LTFLVYGTAN  AKRIAEPDAF960
TLDGVRCRG969

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help