CAZyme3D

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Entry ID

Information for CAZyme ID: AYB68570.1

Basic Information

GenBank IDAYB68570.1
FamilyGH23
Sequence Length206
UniProt IDA0A6M6A1Q2(100,100)Download
Average pLDDT?82.21
CAZy50 ID179206
CAZy50 RepYes, AYB68570.1
Structure ClusterSC_GH23_clus81
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID573
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella pneumoniae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTRLFFGAAL  FATLTVNANA  AFNPPPDRPM  PQNVPETVKN  ECLTDAARFF  GIDRDLVFTL60
FDNEGGKIGS  FVLNTNGTWD  IGPMQINSSN  LAEVKSHFPA  ITWRELAYDA  CASFWVGTWW120
LHRKIIDRKG  NVFEGIADYN  SKTPRVRANY  IFKFMERYNR  RLQRNGKMTQ  LNAWTGLDRV180
KPNPPEITGK  LANNLHQQSG  QYDKQK206

Predicted 3D structure by AlphaFold2 with pLDDT = 82.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTRLFFGAAL  FATLTVNANA  AFNPPPDRPM  PQNVPETVKN  ECLTDAARFF  GIDRDLVFTL60
FDNEGGKIGS  FVLNTNGTWD  IGPMQINSSN  LAEVKSHFPA  ITWRELAYDA  CASFWVGTWW120
LHRKIIDRKG  NVFEGIADYN  SKTPRVRANY  IFKFMERYNR  RLQRNGKMTQ  LNAWTGLDRV180
KPNPPEITGK  LANNLHQQSG  QYDKQK206

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(75-164)

MTRLFFGAAL  FATLTVNANA  AFNPPPDRPM  PQNVPETVKN  ECLTDAARFF  GIDRDLVFTL60
FDNEGGKIGS  FVLNTNGTWD  IGPMQINSSN  LAEVKSHFPA  ITWRELAYDA  CASFWVGTWW120
LHRKIIDRKG  NVFEGIADYN  SKTPRVRANY  IFKFMERYNR  RLQRNGKMTQ  LNAWTGLDRV180
KPNPPEITGK  LANNLHQQSG  QYDKQK206

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help