CAZyme3D

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Entry ID

Information for CAZyme ID: AXT52830.1

Basic Information

GenBank IDAXT52830.1
FamilyPL6_1
Sequence Length767
UniProt IDA0A3A9WJ67(100,100)Download
Average pLDDT?90.71
CAZy50 ID30812
CAZy50 RepYes, AXT52830.1
Structure ClusterSC_PL6_clus22
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1714860
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusAquimarina
SpeciesAquimarina sp. BL5

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKSRLYSYL  LAILLTVSSC  TQTSTTKQTD  GTNLVTTVEE  FNKAIAVAQP  GEEITLSNGI60
WNDVQFVITA  TGTEEKPIII  KAEEKGKVIL  SGNTSLKIGG  KHVIIKELVF  KNGYTKEDAL120
IVFKTDDGKL  AENCRLTEIA  IDHFNPANRF  DKSEWIHLHG  KNNRVDHNYF  GGKLNAGVTL180
VVKLNNKNSL  ENRHRIDHNY  FGYRPNLGSN  GGETLRVGVS  TYSLSPSRTL  IENNYFEQCD240
GEVEIVSLKS  SDNIVRNNVF  YESAGVLALR  HGNRNLIENN  FFIGNNKPGT  GGVRVINEGH300
TIRNNHFQEL  KGKRFFGALP  VMNGVPNSLI  NRYHRAENTD  ITGNKFLKCD  HIQFGVGADN360
ERTDPPQDIR  FTDNVFYHPE  RKQVFEAISD  YSTFSFSGNE  VVSADSKFNH  KGFTQAEITF420
SKDSADGLLK  NQTYQPKLPF  TKNEVGPNWY  TPQKKYFDIT  NKNSNAAQVS  GNENDTLFTM480
VKSASSGDSI  QLKPGTYTFT  KPLVINKTLT  IIADESDNPT  IFTYDKNESQ  KPLVIIENGG540
SLYVKGVIFD  GASENGIAQS  AIATSSKPMI  EHYKLKVVSC  EFKNFNASRK  TAFRAYKNTY600
ADTLIFKNST  FHNISGNAIS  LDGENENRGR  YNAEYVKIDN  CHFSKVMGNA  VSLLRMGNDE660
STTGPYLELK  NSTFIDVNNK  DLGSVVLLWG  VQKLNIDNLL  FINSGKGGRV  IKYEDPGWAI720
STIDRISLIN  SGRIESFGKR  TGNNIEIIKT  EKPLKYPAKY  KGYKTIN767

Predicted 3D structure by AlphaFold2 with pLDDT = 90.71 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKSRLYSYL  LAILLTVSSC  TQTSTTKQTD  GTNLVTTVEE  FNKAIAVAQP  GEEITLSNGI60
WNDVQFVITA  TGTEEKPIII  KAEEKGKVIL  SGNTSLKIGG  KHVIIKELVF  KNGYTKEDAL120
IVFKTDDGKL  AENCRLTEIA  IDHFNPANRF  DKSEWIHLHG  KNNRVDHNYF  GGKLNAGVTL180
VVKLNNKNSL  ENRHRIDHNY  FGYRPNLGSN  GGETLRVGVS  TYSLSPSRTL  IENNYFEQCD240
GEVEIVSLKS  SDNIVRNNVF  YESAGVLALR  HGNRNLIENN  FFIGNNKPGT  GGVRVINEGH300
TIRNNHFQEL  KGKRFFGALP  VMNGVPNSLI  NRYHRAENTD  ITGNKFLKCD  HIQFGVGADN360
ERTDPPQDIR  FTDNVFYHPE  RKQVFEAISD  YSTFSFSGNE  VVSADSKFNH  KGFTQAEITF420
SKDSADGLLK  NQTYQPKLPF  TKNEVGPNWY  TPQKKYFDIT  NKNSNAAQVS  GNENDTLFTM480
VKSASSGDSI  QLKPGTYTFT  KPLVINKTLT  IIADESDNPT  IFTYDKNESQ  KPLVIIENGG540
SLYVKGVIFD  GASENGIAQS  AIATSSKPMI  EHYKLKVVSC  EFKNFNASRK  TAFRAYKNTY600
ADTLIFKNST  FHNISGNAIS  LDGENENRGR  YNAEYVKIDN  CHFSKVMGNA  VSLLRMGNDE660
STTGPYLELK  NSTFIDVNNK  DLGSVVLLWG  VQKLNIDNLL  FINSGKGGRV  IKYEDPGWAI720
STIDRISLIN  SGRIESFGKR  TGNNIEIIKT  EKPLKYPAKY  KGYKTIN767

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL6(33-401)+PL6_1(473-680)

MKKSRLYSYL  LAILLTVSSC  TQTSTTKQTD  GTNLVTTVEE  FNKAIAVAQP  GEEITLSNGI60
WNDVQFVITA  TGTEEKPIII  KAEEKGKVIL  SGNTSLKIGG  KHVIIKELVF  KNGYTKEDAL120
IVFKTDDGKL  AENCRLTEIA  IDHFNPANRF  DKSEWIHLHG  KNNRVDHNYF  GGKLNAGVTL180
VVKLNNKNSL  ENRHRIDHNY  FGYRPNLGSN  GGETLRVGVS  TYSLSPSRTL  IENNYFEQCD240
GEVEIVSLKS  SDNIVRNNVF  YESAGVLALR  HGNRNLIENN  FFIGNNKPGT  GGVRVINEGH300
TIRNNHFQEL  KGKRFFGALP  VMNGVPNSLI  NRYHRAENTD  ITGNKFLKCD  HIQFGVGADN360
ERTDPPQDIR  FTDNVFYHPE  RKQVFEAISD  YSTFSFSGNE  VVSADSKFNH  KGFTQAEITF420
SKDSADGLLK  NQTYQPKLPF  TKNEVGPNWY  TPQKKYFDIT  NKNSNAAQVS  GNENDTLFTM480
VKSASSGDSI  QLKPGTYTFT  KPLVINKTLT  IIADESDNPT  IFTYDKNESQ  KPLVIIENGG540
SLYVKGVIFD  GASENGIAQS  AIATSSKPMI  EHYKLKVVSC  EFKNFNASRK  TAFRAYKNTY600
ADTLIFKNST  FHNISGNAIS  LDGENENRGR  YNAEYVKIDN  CHFSKVMGNA  VSLLRMGNDE660
STTGPYLELK  NSTFIDVNNK  DLGSVVLLWG  VQKLNIDNLL  FINSGKGGRV  IKYEDPGWAI720
STIDRISLIN  SGRIESFGKR  TGNNIEIIKT  EKPLKYPAKY  KGYKTIN767

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help