CAZyme3D

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Entry ID

Information for CAZyme ID: AXR06894.1

Basic Information

GenBank IDAXR06894.1
FamilyCE2
Sequence Length368
UniProt IDA0A346NMY7(100,100)Download
Average pLDDT?92.42
CAZy50 ID120931
CAZy50 RepYes, AXR06894.1
Structure ClusterSC_CE2_clus11
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2303538
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusSalinimonas
SpeciesSalinimonas sediminis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLQDKPHSLK  HSIPHWTLCW  LLLAGIFSSP  LYATVITPDH  EGFSYTGRID  RHDATAPVLS60
WPGSQVQFSA  HTRKLSIELD  DSRGENYYAI  IVDDNTATPF  VFQAHQGRHQ  YSLPMVLEDT120
VHHFVLYKRT  EGEEGDTRFL  GIEIDGSMAK  AVAKPSRKIE  IYGDSVTSGM  GNEAAFNSPD180
HLKSEKNHYL  SYGAIAARAL  SAQLHSISRS  GIGIKVGFVP  FTMTQYYDQL  SAVGDNQTTW240
DFTAYRPDVV  VVNLLQNDHA  LHLDTSRISP  TPTKAEYVQA  YKTFLSTLRE  RYPATPIICS300
LGSMDAVAPG  NEWFDVIEQA  VQALSQQGDK  ALYTLKFDYQ  GYGAHPRLAH  HAHNAQLLED360
KIRNIMGW368

Predicted 3D structure by AlphaFold2 with pLDDT = 92.42 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLQDKPHSLK  HSIPHWTLCW  LLLAGIFSSP  LYATVITPDH  EGFSYTGRID  RHDATAPVLS60
WPGSQVQFSA  HTRKLSIELD  DSRGENYYAI  IVDDNTATPF  VFQAHQGRHQ  YSLPMVLEDT120
VHHFVLYKRT  EGEEGDTRFL  GIEIDGSMAK  AVAKPSRKIE  IYGDSVTSGM  GNEAAFNSPD180
HLKSEKNHYL  SYGAIAARAL  SAQLHSISRS  GIGIKVGFVP  FTMTQYYDQL  SAVGDNQTTW240
DFTAYRPDVV  VVNLLQNDHA  LHLDTSRISP  TPTKAEYVQA  YKTFLSTLRE  RYPATPIICS300
LGSMDAVAPG  NEWFDVIEQA  VQALSQQGDK  ALYTLKFDYQ  GYGAHPRLAH  HAHNAQLLED360
KIRNIMGW368

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE2(158-362)

MLQDKPHSLK  HSIPHWTLCW  LLLAGIFSSP  LYATVITPDH  EGFSYTGRID  RHDATAPVLS60
WPGSQVQFSA  HTRKLSIELD  DSRGENYYAI  IVDDNTATPF  VFQAHQGRHQ  YSLPMVLEDT120
VHHFVLYKRT  EGEEGDTRFL  GIEIDGSMAK  AVAKPSRKIE  IYGDSVTSGM  GNEAAFNSPD180
HLKSEKNHYL  SYGAIAARAL  SAQLHSISRS  GIGIKVGFVP  FTMTQYYDQL  SAVGDNQTTW240
DFTAYRPDVV  VVNLLQNDHA  LHLDTSRISP  TPTKAEYVQA  YKTFLSTLRE  RYPATPIICS300
LGSMDAVAPG  NEWFDVIEQA  VQALSQQGDK  ALYTLKFDYQ  GYGAHPRLAH  HAHNAQLLED360
KIRNIMGW368

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help