CAZyme3D

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Entry ID

Information for CAZyme ID: AXP82110.1

Basic Information

GenBank IDAXP82110.1
FamilyPL6_1
Sequence Length799
UniProt IDA0A385BSW2(100,100)Download
Average pLDDT?93.85
CAZy50 ID27423
CAZy50 RepYes, AXP82110.1
Structure ClusterSC_PL6_clus22
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2027857
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusMariniflexile
SpeciesMariniflexile sp. TRM1-10

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKYLIYLTC  LFAVFAHAKE  ILVSNPQALE  TALKNVAPGD  TIILADQTWT  DVKINFIGKG60
TPENPIVLKA  QTPGHVILNG  TSRIIISGTY  LTVEGLWFKD  GNAIDKSVIN  FRKNETELAN120
FCRVTNCAIT  NYNPDDRASQ  YQWVELWGKN  NRVDHCSFYG  KTNQGPVLIV  GLRGNPENLE180
NNHRIDNNYF  GYRPPLGANG  GETIRVGTSH  TSMESSKTLV  ENNLFEKCNG  EVEIISSKSC240
DNIYRNNLFL  ESEGILTLRH  GNRCLVEGNV  FFGNNKPHTG  GIRVINEGHI  IQNNLMIGLK300
GDGFRAPLVI  MNGVPNGPLN  RYNQVKDVVI  QNNTFINSSA  IELCEGSDEE  RSATPINTTF360
ANNLFYGTES  INLLNISDDI  SGISFSGNKV  QGAYKFSTEG  FEHANLNWEN  LPSYPIPSVS420
SDSLLEVKKT  TRPVRTDLTG  TVRTKVRAGA  IIPGNKKVPA  ALSIQPGVSW  SLEKAKETNA480
VKPQQDYKVV  SVSPAEDALV  HAIKKAKDGT  ILELSEGTYE  ITRGMQVSSN  IIIKGAGSKK540
TVIKISKNAE  KVPGYFFKVT  EGTSLAIKGL  EIDGSSANSV  RYAIVSQNTP  TSKAYNLKLD600
DVYIHGFHDD  GSAIFKAYKG  TFADSIQILN  CRFEKSLRGL  NLSYEKEDLG  KYNAEVIDIQ660
NTLFKDIDQF  AIHYYRGGND  ESTLGGQLHV  NHCVFYNVDD  NEKGRSIRTN  GIVYVTINNS720
IFAGSPESKY  SAILKGDKNS  VSNSVVFNAG  ELKTSSKATS  KSVLNTNPQW  QDTDTFQLKE780
SSALKHAATD  GKDIGLINQ799

Predicted 3D structure by AlphaFold2 with pLDDT = 93.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKYLIYLTC  LFAVFAHAKE  ILVSNPQALE  TALKNVAPGD  TIILADQTWT  DVKINFIGKG60
TPENPIVLKA  QTPGHVILNG  TSRIIISGTY  LTVEGLWFKD  GNAIDKSVIN  FRKNETELAN120
FCRVTNCAIT  NYNPDDRASQ  YQWVELWGKN  NRVDHCSFYG  KTNQGPVLIV  GLRGNPENLE180
NNHRIDNNYF  GYRPPLGANG  GETIRVGTSH  TSMESSKTLV  ENNLFEKCNG  EVEIISSKSC240
DNIYRNNLFL  ESEGILTLRH  GNRCLVEGNV  FFGNNKPHTG  GIRVINEGHI  IQNNLMIGLK300
GDGFRAPLVI  MNGVPNGPLN  RYNQVKDVVI  QNNTFINSSA  IELCEGSDEE  RSATPINTTF360
ANNLFYGTES  INLLNISDDI  SGISFSGNKV  QGAYKFSTEG  FEHANLNWEN  LPSYPIPSVS420
SDSLLEVKKT  TRPVRTDLTG  TVRTKVRAGA  IIPGNKKVPA  ALSIQPGVSW  SLEKAKETNA480
VKPQQDYKVV  SVSPAEDALV  HAIKKAKDGT  ILELSEGTYE  ITRGMQVSSN  IIIKGAGSKK540
TVIKISKNAE  KVPGYFFKVT  EGTSLAIKGL  EIDGSSANSV  RYAIVSQNTP  TSKAYNLKLD600
DVYIHGFHDD  GSAIFKAYKG  TFADSIQILN  CRFEKSLRGL  NLSYEKEDLG  KYNAEVIDIQ660
NTLFKDIDQF  AIHYYRGGND  ESTLGGQLHV  NHCVFYNVDD  NEKGRSIRTN  GIVYVTINNS720
IFAGSPESKY  SAILKGDKNS  VSNSVVFNAG  ELKTSSKATS  KSVLNTNPQW  QDTDTFQLKE780
SSALKHAATD  GKDIGLINQ799

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL6(21-392)+PL6_1(496-747)

MKKYLIYLTC  LFAVFAHAKE  ILVSNPQALE  TALKNVAPGD  TIILADQTWT  DVKINFIGKG60
TPENPIVLKA  QTPGHVILNG  TSRIIISGTY  LTVEGLWFKD  GNAIDKSVIN  FRKNETELAN120
FCRVTNCAIT  NYNPDDRASQ  YQWVELWGKN  NRVDHCSFYG  KTNQGPVLIV  GLRGNPENLE180
NNHRIDNNYF  GYRPPLGANG  GETIRVGTSH  TSMESSKTLV  ENNLFEKCNG  EVEIISSKSC240
DNIYRNNLFL  ESEGILTLRH  GNRCLVEGNV  FFGNNKPHTG  GIRVINEGHI  IQNNLMIGLK300
GDGFRAPLVI  MNGVPNGPLN  RYNQVKDVVI  QNNTFINSSA  IELCEGSDEE  RSATPINTTF360
ANNLFYGTES  INLLNISDDI  SGISFSGNKV  QGAYKFSTEG  FEHANLNWEN  LPSYPIPSVS420
SDSLLEVKKT  TRPVRTDLTG  TVRTKVRAGA  IIPGNKKVPA  ALSIQPGVSW  SLEKAKETNA480
VKPQQDYKVV  SVSPAEDALV  HAIKKAKDGT  ILELSEGTYE  ITRGMQVSSN  IIIKGAGSKK540
TVIKISKNAE  KVPGYFFKVT  EGTSLAIKGL  EIDGSSANSV  RYAIVSQNTP  TSKAYNLKLD600
DVYIHGFHDD  GSAIFKAYKG  TFADSIQILN  CRFEKSLRGL  NLSYEKEDLG  KYNAEVIDIQ660
NTLFKDIDQF  AIHYYRGGND  ESTLGGQLHV  NHCVFYNVDD  NEKGRSIRTN  GIVYVTINNS720
IFAGSPESKY  SAILKGDKNS  VSNSVVFNAG  ELKTSSKATS  KSVLNTNPQW  QDTDTFQLKE780
SSALKHAATD  GKDIGLINQ799

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help