CAZyme3D

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Entry ID

Information for CAZyme ID: AXJ02100.1

Basic Information

GenBank IDAXJ02100.1
FamilyGT1
Sequence Length376
UniProt IDA0A345UNP8(100,100)Download
Average pLDDT?86.00
CAZy50 ID114989
CAZy50 RepYes, AXJ02100.1
Structure ClusterSC_GT1_clus101
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1457365
KingdomBacteria
PhylumBalneolota
ClassBalneolia
OrderBalneolales
FamilyCyclonatronaceae
GenusCyclonatronum
SpeciesCyclonatronum proteinivorum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKILYGIQGT  GNGHMSRANA  IVPRLSEYAE  VDILVSGHSS  EIKSGFPVKF  QYPGLGFSFG60
KNGGINYWQS  LVRSKPAQFI  KDIRKLPVQS  YDFIITDFEP  VTAWAARLSG  TPCIGVSHQA120
SFLSQKTPRP  RSTQWFGETL  FQWYAPVDTA  IGFHYQPYDY  SILTPVIRDE  VRSLNPSDEG180
HVTIYLPAYS  PDRLLPHLQK  LGLPVHLFTK  HEHLARTAGN  IRIMPVNSEG  YLRSLESCTA240
LVCGAGFESP  SEGLFLGKRM  LCIPMKQQYE  QHCNAAALQQ  MGIAVHPKVD  DGFTAELQQL300
LERPAPEPLC  YPDVLTEVCD  TVFSLYSNFE  VIRLCSMNQY  AADNRLLSMP  KPDFSSENSH360
TPDFSFGTTD  QPAVNS376

Predicted 3D structure by AlphaFold2 with pLDDT = 86.00 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKILYGIQGT  GNGHMSRANA  IVPRLSEYAE  VDILVSGHSS  EIKSGFPVKF  QYPGLGFSFG60
KNGGINYWQS  LVRSKPAQFI  KDIRKLPVQS  YDFIITDFEP  VTAWAARLSG  TPCIGVSHQA120
SFLSQKTPRP  RSTQWFGETL  FQWYAPVDTA  IGFHYQPYDY  SILTPVIRDE  VRSLNPSDEG180
HVTIYLPAYS  PDRLLPHLQK  LGLPVHLFTK  HEHLARTAGN  IRIMPVNSEG  YLRSLESCTA240
LVCGAGFESP  SEGLFLGKRM  LCIPMKQQYE  QHCNAAALQQ  MGIAVHPKVD  DGFTAELQQL300
LERPAPEPLC  YPDVLTEVCD  TVFSLYSNFE  VIRLCSMNQY  AADNRLLSMP  KPDFSSENSH360
TPDFSFGTTD  QPAVNS376

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MKILYGIQGT  GNGHMSRANA  IVPRLSEYAE  VDILVSGHSS  EIKSGFPVKF  QYPGLGFSFG60
KNGGINYWQS  LVRSKPAQFI  KDIRKLPVQS  YDFIITDFEP  VTAWAARLSG  TPCIGVSHQA120
SFLSQKTPRP  RSTQWFGETL  FQWYAPVDTA  IGFHYQPYDY  SILTPVIRDE  VRSLNPSDEG180
HVTIYLPAYS  PDRLLPHLQK  LGLPVHLFTK  HEHLARTAGN  IRIMPVNSEG  YLRSLESCTA240
LVCGAGFESP  SEGLFLGKRM  LCIPMKQQYE  QHCNAAALQQ  MGIAVHPKVD  DGFTAELQQL300
LERPAPEPLC  YPDVLTEVCD  TVFSLYSNFE  VIRLCSMNQY  AADNRLLSMP  KPDFSSENSH360
TPDFSFGTTD  QPAVNS376

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help