CAZyme3D

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Entry ID

Information for CAZyme ID: AXJ01748.1

Basic Information

GenBank IDAXJ01748.1
FamilyCBM48, GH13
Sequence Length961
UniProt IDA0A345UMP6(100,100)Download
Average pLDDT?90.53
CAZy50 ID16100
CAZy50 RepYes, AXJ01748.1
Structure ClusterSC_CBM48_clus9, SC_GH13_clus332
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1457365
KingdomBacteria
PhylumBalneolota
ClassBalneolia
OrderBalneolales
FamilyCyclonatronaceae
GenusCyclonatronum
SpeciesCyclonatronum proteinivorum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLYSRLHHLM  LLFLLILLMP  AAYLQAQVVT  TIPDFPTEDQ  PVSIIFDATQ  GNGGLAGYTG60
DVYAHTGVIT  NLSDGPSGWR  YVKTNWGQNT  PETKLTRIGE  DLYQLDIENI  REYYGVPLSE120
QILQMAFVFR  SGEQVNGSFL  EGKDVGGADI  FVDLFNDPLL  VRFTSPSNDP  YNPAFAELDD180
VIEVRIAGFA  LETEIAELRL  YADEVLVASA  DDVADLTYDL  TIASTGRIDL  RAEVEDDAGD240
VAEAFTYIVV  NPEVTEMAPP  AGTRYGINYH  DDDTSVTLAI  WAPYIDDIYV  IGDFTEWEIR300
PEFFMNRHTV  NPDSVMFWTT  VTDLTPGVEY  GFQYLVEGER  RIGELYSHKV  LDPWNDRFIS360
EEVYPNLMPY  PTGKTSGMVS  ILQTAAPQYE  WQTTDYERID  HRDMIKYELL  IRDWLDESTY420
RNVADSLDYL  QRLGINALEL  MPVSNFDGNI  SWGYNPNFHL  AVEKSYGPAF  ELKRLIDEAH480
SRGMAVLLDV  VYNHATDLSP  LIGLYGHQNN  PLIGPGHEFN  VFNHLNHDHP  KIKYWMDRAN540
AFWIEEFRVD  GFRFDLTKGF  ATNFNNQNYH  GYNAQRIANL  KRMADAIWEI  DPDFWIVLEH600
FTANSEEMEL  SNWRRNEGRP  GMLLWGNMNF  NYNEATMGWH  SNNQSNFSGV  FHQSRGWSAP660
NLVGYMESHD  EQRLMYRNLQ  FGRSSGGYDI  RDFETAMGRQ  MLAGAFFFTI  PGPKMLWQFG720
ELGYDIPLDE  TGPNRTAPMP  VMWDDYLADP  VRVELYNTWR  AIIHLRQSSE  AFRTEDVSLD780
LQPSVKRIWL  NHESMNVAII  GNFDVQQRTV  DANLQHTGLW  YDYFAQEARE  FSATNEPVVL840
EPGEFVIYTT  ELVELPEGGL  TPVGIRDEDQ  LEQPAGFGLL  QNYPNPFNPT  TNVRYEVGET900
TDVRLEVFNV  LGQRVALLHN  GLQTVGTHTA  VFDGSRLTSG  VYIVRMQANG  QTFTNKMLLV960
K961

Predicted 3D structure by AlphaFold2 with pLDDT = 90.53 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLYSRLHHLM  LLFLLILLMP  AAYLQAQVVT  TIPDFPTEDQ  PVSIIFDATQ  GNGGLAGYTG60
DVYAHTGVIT  NLSDGPSGWR  YVKTNWGQNT  PETKLTRIGE  DLYQLDIENI  REYYGVPLSE120
QILQMAFVFR  SGEQVNGSFL  EGKDVGGADI  FVDLFNDPLL  VRFTSPSNDP  YNPAFAELDD180
VIEVRIAGFA  LETEIAELRL  YADEVLVASA  DDVADLTYDL  TIASTGRIDL  RAEVEDDAGD240
VAEAFTYIVV  NPEVTEMAPP  AGTRYGINYH  DDDTSVTLAI  WAPYIDDIYV  IGDFTEWEIR300
PEFFMNRHTV  NPDSVMFWTT  VTDLTPGVEY  GFQYLVEGER  RIGELYSHKV  LDPWNDRFIS360
EEVYPNLMPY  PTGKTSGMVS  ILQTAAPQYE  WQTTDYERID  HRDMIKYELL  IRDWLDESTY420
RNVADSLDYL  QRLGINALEL  MPVSNFDGNI  SWGYNPNFHL  AVEKSYGPAF  ELKRLIDEAH480
SRGMAVLLDV  VYNHATDLSP  LIGLYGHQNN  PLIGPGHEFN  VFNHLNHDHP  KIKYWMDRAN540
AFWIEEFRVD  GFRFDLTKGF  ATNFNNQNYH  GYNAQRIANL  KRMADAIWEI  DPDFWIVLEH600
FTANSEEMEL  SNWRRNEGRP  GMLLWGNMNF  NYNEATMGWH  SNNQSNFSGV  FHQSRGWSAP660
NLVGYMESHD  EQRLMYRNLQ  FGRSSGGYDI  RDFETAMGRQ  MLAGAFFFTI  PGPKMLWQFG720
ELGYDIPLDE  TGPNRTAPMP  VMWDDYLADP  VRVELYNTWR  AIIHLRQSSE  AFRTEDVSLD780
LQPSVKRIWL  NHESMNVAII  GNFDVQQRTV  DANLQHTGLW  YDYFAQEARE  FSATNEPVVL840
EPGEFVIYTT  ELVELPEGGL  TPVGIRDEDQ  LEQPAGFGLL  QNYPNPFNPT  TNVRYEVGET900
TDVRLEVFNV  LGQRVALLHN  GLQTVGTHTA  VFDGSRLTSG  VYIVRMQANG  QTFTNKMLLV960
K961

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM48(265-355)+GH13_10(417-723)

MLYSRLHHLM  LLFLLILLMP  AAYLQAQVVT  TIPDFPTEDQ  PVSIIFDATQ  GNGGLAGYTG60
DVYAHTGVIT  NLSDGPSGWR  YVKTNWGQNT  PETKLTRIGE  DLYQLDIENI  REYYGVPLSE120
QILQMAFVFR  SGEQVNGSFL  EGKDVGGADI  FVDLFNDPLL  VRFTSPSNDP  YNPAFAELDD180
VIEVRIAGFA  LETEIAELRL  YADEVLVASA  DDVADLTYDL  TIASTGRIDL  RAEVEDDAGD240
VAEAFTYIVV  NPEVTEMAPP  AGTRYGINYH  DDDTSVTLAI  WAPYIDDIYV  IGDFTEWEIR300
PEFFMNRHTV  NPDSVMFWTT  VTDLTPGVEY  GFQYLVEGER  RIGELYSHKV  LDPWNDRFIS360
EEVYPNLMPY  PTGKTSGMVS  ILQTAAPQYE  WQTTDYERID  HRDMIKYELL  IRDWLDESTY420
RNVADSLDYL  QRLGINALEL  MPVSNFDGNI  SWGYNPNFHL  AVEKSYGPAF  ELKRLIDEAH480
SRGMAVLLDV  VYNHATDLSP  LIGLYGHQNN  PLIGPGHEFN  VFNHLNHDHP  KIKYWMDRAN540
AFWIEEFRVD  GFRFDLTKGF  ATNFNNQNYH  GYNAQRIANL  KRMADAIWEI  DPDFWIVLEH600
FTANSEEMEL  SNWRRNEGRP  GMLLWGNMNF  NYNEATMGWH  SNNQSNFSGV  FHQSRGWSAP660
NLVGYMESHD  EQRLMYRNLQ  FGRSSGGYDI  RDFETAMGRQ  MLAGAFFFTI  PGPKMLWQFG720
ELGYDIPLDE  TGPNRTAPMP  VMWDDYLADP  VRVELYNTWR  AIIHLRQSSE  AFRTEDVSLD780
LQPSVKRIWL  NHESMNVAII  GNFDVQQRTV  DANLQHTGLW  YDYFAQEARE  FSATNEPVVL840
EPGEFVIYTT  ELVELPEGGL  TPVGIRDEDQ  LEQPAGFGLL  QNYPNPFNPT  TNVRYEVGET900
TDVRLEVFNV  LGQRVALLHN  GLQTVGTHTA  VFDGSRLTSG  VYIVRMQANG  QTFTNKMLLV960
K961

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help