CAZyme3D

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Entry ID

Information for CAZyme ID: AXJ00315.1

Basic Information

GenBank IDAXJ00315.1
FamilyGT4
Sequence Length410
UniProt IDA0A345UIL3(100,100)Download
Average pLDDT?92.94
CAZy50 ID84603
CAZy50 RepNo, AKP54210.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1457365
KingdomBacteria
PhylumBalneolota
ClassBalneolia
OrderBalneolales
FamilyCyclonatronaceae
GenusCyclonatronum
SpeciesCyclonatronum proteinivorum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTKSTGMQQN  LPIVMISMSR  WDGDFSSAAW  SIARTFAQSQ  PVIYVDYPYT  FADFVRERKQ60
PSVQARQQAL  LFGKGGLKKL  EQFAPHLYAL  TPPLMLPCNS  FEDGALYRTL  QNRNNKVLAR120
SILKALKSLG  FRDFVFYNSF  NPLYLTTLPK  GFRPKAVLYQ  SRDNIRALEP  YLRKHGAGGE180
ITAIQNADVS  FATSRQLQRD  LAELSGEEVE  YLPNAASFGT  FRKAYEDDLP  RPMDLAEIRG240
PIIGYTGNIC  HRQNYDILQR  VCEVHADKNV  VLVGPRNHAG  HTDIDLDAIP  NLHFLGPKKI300
DDLPAYLAHF  DALILPFKCN  EVTKSIYPLK  INEYLASGKP  VIATPFSEDI  QSFGDVIALA360
DGPDAFAAAI  TEALTANTSE  KARKRYERAS  QNTWEQRVEQ  IRAWMGDVMG  410

Predicted 3D structure by AlphaFold2 with pLDDT = 92.94 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(241-345)

MTKSTGMQQN  LPIVMISMSR  WDGDFSSAAW  SIARTFAQSQ  PVIYVDYPYT  FADFVRERKQ60
PSVQARQQAL  LFGKGGLKKL  EQFAPHLYAL  TPPLMLPCNS  FEDGALYRTL  QNRNNKVLAR120
SILKALKSLG  FRDFVFYNSF  NPLYLTTLPK  GFRPKAVLYQ  SRDNIRALEP  YLRKHGAGGE180
ITAIQNADVS  FATSRQLQRD  LAELSGEEVE  YLPNAASFGT  FRKAYEDDLP  RPMDLAEIRG240
PIIGYTGNIC  HRQNYDILQR  VCEVHADKNV  VLVGPRNHAG  HTDIDLDAIP  NLHFLGPKKI300
DDLPAYLAHF  DALILPFKCN  EVTKSIYPLK  INEYLASGKP  VIATPFSEDI  QSFGDVIALA360
DGPDAFAAAI  TEALTANTSE  KARKRYERAS  QNTWEQRVEQ  IRAWMGDVMG  410

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help