CAZyme3D

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Entry ID

Information for CAZyme ID: AKP54210.1

Basic Information

GenBank IDAKP54210.1
FamilyGT4
Sequence Length433
UniProt IDA0A0H4PMC9(100,100)Download
Average pLDDT?90.94
CAZy50 ID84603
CAZy50 RepYes, AKP54210.1
Structure ClusterSC_GT4_clus185
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID320787
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusCyclobacterium
SpeciesCyclobacterium amurskyense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVNINLNLSF  PMRKTFIILE  KKQLFMKDFS  NLTFDKVTIV  MTSMSRWDGE  FSSASWSLAK60
TFAQTQKVIY  VDYPFTFLDY  LKERKKPSVK  ARKSALIWGN  NSIKQLSQFS  PKLYALSPPL120
MLPINWLPQG  SLYNFFSNWN  DRRLAKSISK  ALKELHEEAF  IYFNSFNPLY  LTKLPNSFKP180
NAFVYQSRDN  IRALEPYLRK  HGARKEIEAV  QSADLSLVTS  RMLQKDLEAL  SGKKVAYFPN240
AADFELFKSA  YELELNVPKD  LKNIPKPIIG  YTGNICHRLD  YDLIKTVCEA  NPDKSMVMVG300
PRNHQGHTDI  NLDEIPNLYF  TGPKKIEQLP  QYLAHFQLLI  LPFLCNEVTK  SIYPLKINEY360
LASGKPIVAT  PFSEDIQLFH  PLISLEKSPQ  DFNKAIEMEL  TTNTEEKAKS  RYTEASKNTW420
KGRVKLFWEL  LMD433

Predicted 3D structure by AlphaFold2 with pLDDT = 90.94 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVNINLNLSF  PMRKTFIILE  KKQLFMKDFS  NLTFDKVTIV  MTSMSRWDGE  FSSASWSLAK60
TFAQTQKVIY  VDYPFTFLDY  LKERKKPSVK  ARKSALIWGN  NSIKQLSQFS  PKLYALSPPL120
MLPINWLPQG  SLYNFFSNWN  DRRLAKSISK  ALKELHEEAF  IYFNSFNPLY  LTKLPNSFKP180
NAFVYQSRDN  IRALEPYLRK  HGARKEIEAV  QSADLSLVTS  RMLQKDLEAL  SGKKVAYFPN240
AADFELFKSA  YELELNVPKD  LKNIPKPIIG  YTGNICHRLD  YDLIKTVCEA  NPDKSMVMVG300
PRNHQGHTDI  NLDEIPNLYF  TGPKKIEQLP  QYLAHFQLLI  LPFLCNEVTK  SIYPLKINEY360
LASGKPIVAT  PFSEDIQLFH  PLISLEKSPQ  DFNKAIEMEL  TTNTEEKAKS  RYTEASKNTW420
KGRVKLFWEL  LMD433

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MVNINLNLSF  PMRKTFIILE  KKQLFMKDFS  NLTFDKVTIV  MTSMSRWDGE  FSSASWSLAK60
TFAQTQKVIY  VDYPFTFLDY  LKERKKPSVK  ARKSALIWGN  NSIKQLSQFS  PKLYALSPPL120
MLPINWLPQG  SLYNFFSNWN  DRRLAKSISK  ALKELHEEAF  IYFNSFNPLY  LTKLPNSFKP180
NAFVYQSRDN  IRALEPYLRK  HGARKEIEAV  QSADLSLVTS  RMLQKDLEAL  SGKKVAYFPN240
AADFELFKSA  YELELNVPKD  LKNIPKPIIG  YTGNICHRLD  YDLIKTVCEA  NPDKSMVMVG300
PRNHQGHTDI  NLDEIPNLYF  TGPKKIEQLP  QYLAHFQLLI  LPFLCNEVTK  SIYPLKINEY360
LASGKPIVAT  PFSEDIQLFH  PLISLEKSPQ  DFNKAIEMEL  TTNTEEKAKS  RYTEASKNTW420
KGRVKLFWEL  LMD433

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help