CAZyme3D

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Entry ID

Information for CAZyme ID: AWX13254.1

Basic Information

GenBank IDAWX13254.1
FamilyGT80
Sequence Length425
UniProt IDA0A8E3MFV2(97.4,99.3)Download
Average pLDDT?88.20
CAZy50 ID87310
CAZy50 RepYes, AWX13254.1
Structure ClusterSC_GT80_clus3
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID221402
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusMergibacter
SpeciesMergibacter septicus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLKDIFKKIG  LYFLLFVGLS  QQLLAKNITV  YLDYATLPAL  NTLLDFSQNK  DDRSTVRIFG60
LSRFPLSQEI  VDQYPAGVIK  VAKMKRNDQT  DFDQLLFKEI  EDSKETVNLT  IYANLTWAAK120
MLSPLAAYMN  THPNKVKIKH  LYLYDDGSGD  YLALYQNRNK  NIQQELEQAE  KLLPYLLVAK180
EKEFSAEQFN  LPVFYRYVWH  KSVPTTYIML  RPDYLTKDPL  MQPLKTYLGD  RIEQMDWRKY240
QHLTAEQQQF  FLQLVGFTPE  IKHSLEIKQK  KFVFTGTTTW  LGDSKDREYY  AKAQTNILNN300
FIQPKGALYI  GEGYQNYFKG  HPRGLDINDY  ILVHTKGLIN  IPANIPFELL  IMTDLLPEKV360
GGMASSLYFS  LPEKNISHLI  FTTSKEVKTA  LDAFNTDLLK  MMLLLEIVKP  EQVVFWDQLP420
QLSIN425

Predicted 3D structure by AlphaFold2 with pLDDT = 88.20 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLKDIFKKIG  LYFLLFVGLS  QQLLAKNITV  YLDYATLPAL  NTLLDFSQNK  DDRSTVRIFG60
LSRFPLSQEI  VDQYPAGVIK  VAKMKRNDQT  DFDQLLFKEI  EDSKETVNLT  IYANLTWAAK120
MLSPLAAYMN  THPNKVKIKH  LYLYDDGSGD  YLALYQNRNK  NIQQELEQAE  KLLPYLLVAK180
EKEFSAEQFN  LPVFYRYVWH  KSVPTTYIML  RPDYLTKDPL  MQPLKTYLGD  RIEQMDWRKY240
QHLTAEQQQF  FLQLVGFTPE  IKHSLEIKQK  KFVFTGTTTW  LGDSKDREYY  AKAQTNILNN300
FIQPKGALYI  GEGYQNYFKG  HPRGLDINDY  ILVHTKGLIN  IPANIPFELL  IMTDLLPEKV360
GGMASSLYFS  LPEKNISHLI  FTTSKEVKTA  LDAFNTDLLK  MMLLLEIVKP  EQVVFWDQLP420
QLSIN425

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT80(27-409)

MLKDIFKKIG  LYLLLFVGLS  QQLSAKNITV  YLDYATLPAL  NTLLDFAQNK  DDRSTVRIFG60
LSRFPLSQEI  VDQYPAGVIK  VAKMKRNDQT  DFDQLLFKEI  EDSKETVNLT  IYANLTWAAK120
MLSPLAAYMH  THPNKVKIKH  LYLYDDGSGD  YLALYQNRNK  NIQQELEQAE  KLLPYLLVAK180
EKEFSAEQFN  LPAFYRYVWH  KSVPTTYIML  RPDYLTKDPL  MQPLKTYLGD  RIEQMDWTKY240
QHLTAEQQQF  FLQLVGFTPE  IKHSLETKQK  KFVFTGTTTW  LGDSKDREYY  AKAQTNILNN300
FIQPNGALYI  GEGYQNYFKG  HPRGLDINDY  ILAHTKELIN  ISANIPFELL  IMTDLLPEKV360
GGMASSLYFS  LPEKNISHLI  FTTSKEVKTA  LDAFNTDLLK  MMLLLEIVKP  EQVVFWDQLP420
QLPQ424

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help