Information for CAZyme ID: AWX13254.1
Basic Information
GenBank ID | AWX13254.1 |
Family | GT80 |
Sequence Length | 425 |
UniProt ID | A0A8E3MFV2(97.4,99.3)![]() |
Average pLDDT? | 88.20 |
CAZy50 ID | 87310 |
CAZy50 Rep | Yes, AWX13254.1 |
Structure Cluster | SC_GT80_clus3 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 221402 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Gammaproteobacteria |
Order | Pasteurellales |
Family | Pasteurellaceae |
Genus | Mergibacter |
Species | Mergibacter septicus |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MLKDIFKKIG LYFLLFVGLS QQLLAKNITV YLDYATLPAL NTLLDFSQNK DDRSTVRIFG | 60 |
LSRFPLSQEI VDQYPAGVIK VAKMKRNDQT DFDQLLFKEI EDSKETVNLT IYANLTWAAK | 120 |
MLSPLAAYMN THPNKVKIKH LYLYDDGSGD YLALYQNRNK NIQQELEQAE KLLPYLLVAK | 180 |
EKEFSAEQFN LPVFYRYVWH KSVPTTYIML RPDYLTKDPL MQPLKTYLGD RIEQMDWRKY | 240 |
QHLTAEQQQF FLQLVGFTPE IKHSLEIKQK KFVFTGTTTW LGDSKDREYY AKAQTNILNN | 300 |
FIQPKGALYI GEGYQNYFKG HPRGLDINDY ILVHTKGLIN IPANIPFELL IMTDLLPEKV | 360 |
GGMASSLYFS LPEKNISHLI FTTSKEVKTA LDAFNTDLLK MMLLLEIVKP EQVVFWDQLP | 420 |
QLSIN | 425 |
Predicted 3D structure by AlphaFold2 with pLDDT = 88.20 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MLKDIFKKIG LYFLLFVGLS QQLLAKNITV YLDYATLPAL NTLLDFSQNK DDRSTVRIFG | 60 |
LSRFPLSQEI VDQYPAGVIK VAKMKRNDQT DFDQLLFKEI EDSKETVNLT IYANLTWAAK | 120 |
MLSPLAAYMN THPNKVKIKH LYLYDDGSGD YLALYQNRNK NIQQELEQAE KLLPYLLVAK | 180 |
EKEFSAEQFN LPVFYRYVWH KSVPTTYIML RPDYLTKDPL MQPLKTYLGD RIEQMDWRKY | 240 |
QHLTAEQQQF FLQLVGFTPE IKHSLEIKQK KFVFTGTTTW LGDSKDREYY AKAQTNILNN | 300 |
FIQPKGALYI GEGYQNYFKG HPRGLDINDY ILVHTKGLIN IPANIPFELL IMTDLLPEKV | 360 |
GGMASSLYFS LPEKNISHLI FTTSKEVKTA LDAFNTDLLK MMLLLEIVKP EQVVFWDQLP | 420 |
QLSIN | 425 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.