CAZyme3D

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Entry ID

Information for CAZyme ID: AWV33854.1

Basic Information

GenBank IDAWV33854.1
FamilyCBM3, CBM30, GH9
Sequence Length1116
UniProt IDA0A1R0Z7R7(99.7,100)Download
Average pLDDT?89.69
CAZy50 ID9957
CAZy50 RepYes, AWV33854.1
Structure ClusterSC_CBM30_clus2, SC_CBM30_clus5, SC_CBM3_clus14, SC_CBM3_clus29, SC_CBM3_clus6, SC_GH9_clus51
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID189426
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus odorifer

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRKKVSVFLA  LTMFVTIFFS  NPIKTNAATP  EAPAGWRDLL  DYQIFSNISD  GWAGDSGFGL60
ETENSKLPID  STAMYNGLPS  LLLNAKTPTS  PSWYNALITV  AGWKAYDFTS  YHPNGFLEFN120
IKGNAGGESF  LLGFKDRVFE  RASGNEITTT  VNINNYVNIT  TSWTHVKIPL  KELIQVSQGI180
DVSSIDALSI  KNNGFQPLKV  WLNDIRVTSP  DKEKEYAPIK  VNQLGYPVDG  VKQALVTGFE240
DVLTVDAGTP  FNIINATNNS  TAYSGTLVLT  KNYDAIDSGE  RIFTADFTNL  TIPGKYYVSV300
QGLQNSPKFT  IGEANEIYEP  FLNDVTRYFY  YQRTGINITS  PYTQNYQRTD  FTPDTAVPLM360
SNPSIKKDVS  KGWYDAGDKG  KYVNAGAKAL  SDLFWAYEMM  PEKFTDNQFN  IPESGNGIPD420
ILDEARWELE  WMLKMQDAAT  GGFYARVTFQ  DDDNMVDREI  IDKDTVSSRT  DIKTTADTAT480
AAGVLAHAYL  IYQNIDPAFA  QSCLDAAIDA  WGYLEAHPEN  IRTPNTGRWP  YDVTDDASNR540
LWAAGSLYRS  TGDAEYNDYF  LANYTDMGIF  FEDTLDFASG  WANTWNTGFF  SYLKAANPDS600
GVLSWYSDKF  QQWFNDKVSR  YNDSPWKSII  KDGNYYWGIT  MQVADTPMEM  IIGTKLLGTF660
ESNRAIINEI  NNSQLDWILG  QNPVGVSFVS  GYGDNSVKYP  FSIMYRTDGL  PGVPKGYLVG720
GPNKYSNDIT  VGNQISRFAA  KNYTDNFQEW  TTNEHTVYWN  SGLVFIAAFA  TGNSSNSTIN780
PTTAAFDKKT  TNQADIPVTL  TLNGNTLTDI  KNGTTSLVVD  TDYTVSGNTV  TLHKSYLAQQ840
PIGTANLTFL  FNAGSSATLS  VAVNDSSVNN  STISPPTATF  DKQTANQTDI  PVTLTLNDNT900
LIGINNGTTA  LVAGTDYTVS  GTTVTIQKAY  LASQPVGTTT  LTFNFSAGAS  ANLAVSVVDT960
SSTGSGSITV  QQYNSPVTAT  SNSLSPRIKL  KNTGTTAINL  SDVKLHYYYT  IDGEKDQNFW1020
CDWSTVGSSN  VTGAFVKLPA  PLTGADHYLE  LGFTSGAGSL  AAGASIELQI  RMNKTDWTNY1080
TQTGDYSFDP  TSSTYTDWSH  TTGYIAGALQ  WGTEPQ1116

Predicted 3D structure by AlphaFold2 with pLDDT = 89.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRKKVSVFLA  LTMFVTIFFS  NPIKTNAATP  EAPAGWRDLL  DYQIFSNISD  GWAGDSGFGL60
ETENSKLPID  STAMYNGLPS  LLLNAKTPTS  PSWYNALITV  AGWKAYDFTS  YHPNGFLEFN120
IKGNAGGESF  LLGFKDRVFE  RASGNEITTT  VNINNYVNIT  TSWTHVKIPL  KELIQVSQGI180
DVSSIDALSI  KNNGFQPLKV  WLNDIRVTSP  DKEKEYAPIK  VNQLGYPVDG  VKQALVTGFE240
DVLTVDAGTP  FNIINATNNS  TAYSGTLVLT  KNYDAIDSGE  RIFTADFTNL  TIPGKYYVSV300
QGLQNSPKFT  IGEANEIYEP  FLNDVTRYFY  YQRTGINITS  PYTQNYQRTD  FTPDTAVPLM360
SNPSIKKDVS  KGWYDAGDKG  KYVNAGAKAL  SDLFWAYEMM  PEKFTDNQFN  IPESGNGIPD420
ILDEARWELE  WMLKMQDAAT  GGFYARVTFQ  DDDNMVDREI  IDKDTVSSRT  DIKTTADTAT480
AAGVLAHAYL  IYQNIDPAFA  QSCLDAAIDA  WGYLEAHPEN  IRTPNTGRWP  YDVTDDASNR540
LWAAGSLYRS  TGDAEYNDYF  LANYTDMGIF  FEDTLDFASG  WANTWNTGFF  SYLKAANPDS600
GVLSWYSDKF  QQWFNDKVSR  YNDSPWKSII  KDGNYYWGIT  MQVADTPMEM  IIGTKLLGTF660
ESNRAIINEI  NNSQLDWILG  QNPVGVSFVS  GYGDNSVKYP  FSIMYRTDGL  PGVPKGYLVG720
GPNKYSNDIT  VGNQISRFAA  KNYTDNFQEW  TTNEHTVYWN  SGLVFIAAFA  TGNSSNSTIN780
PTTAAFDKKT  TNQADIPVTL  TLNGNTLTDI  KNGTTSLVVD  TDYTVSGNTV  TLHKSYLAQQ840
PIGTANLTFL  FNAGSSATLS  VAVNDSSVNN  STISPPTATF  DKQTANQTDI  PVTLTLNDNT900
LIGINNGTTA  LVAGTDYTVS  GTTVTIQKAY  LASQPVGTTT  LTFNFSAGAS  ANLAVSVVDT960
SSTGSGSITV  QQYNSPVTAT  SNSLSPRIKL  KNTGTTAINL  SDVKLHYYYT  IDGEKDQNFW1020
CDWSTVGSSN  VTGAFVKLPA  PLTGADHYLE  LGFTSGAGSL  AAGASIELQI  RMNKTDWTNY1080
TQTGDYSFDP  TSSTYTDWSH  TTGYIAGALQ  WGTEPQ1116

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM30(66-235)+GH9(318-768)+CBM46(786-861)+CBM46(881-954)+CBM3(977-1052)

MRKKVSVFLA  LTMFVTIFFS  NPIKTNAATP  EAPAGWRDLL  DYQIFSNISD  GWAGDSGFGL60
ETENSKLPID  STAMYNGLPS  LLLNAKTPTS  PSWYNALITV  AGWKAYDFTS  YHPNGFLEFN120
IKGNAGGESF  LLGFKDRVFE  RAAGNEITTT  VNINNYVNIT  TSWTHVKIPL  KDLIQVSQGI180
DVSSIDALSI  KNNGFQPLKV  WLNDIRVTSP  DKEKEYAPIK  VNQLGYPVDG  VKQALVTGFE240
DVLTVDAGTP  FNIINATNNS  TAYSGTLVLT  KNYDAIDSGE  RIFTADFTNL  TIPGKYYVSV300
QGLQNSPKFT  IGEANEIYEP  FLNDVTRYFY  YQRTGINITS  PYTQNYQRTD  FTPDTAVPLM360
SNPSIKKDVS  KGWYDAGDKG  KYVNAGAKAL  SDLFWAYEMM  PEKFTDNQFN  IPESGNGIPD420
ILDEARWELE  WMLKMQDAAT  GGFYARVTFQ  DDDNMVDREI  IDKDTVSSRT  DIKTTADTAT480
AAGVLAHAYL  IYQNIDPAFA  QSCLDAAIDA  WGYLEAHPEN  IRTPNTGRWP  YDVTDDASNR540
LWAAGSLYRS  TGDAEYNDYF  LANYTDMGIF  FEDTLDFASG  WANTWNTGFF  SYLKAANPDS600
GVLSWYSDKF  QQWFNDKVSR  YNDSPWKSII  KDGNYYWGIT  MQVADTPMEM  IIGTKLLGTF660
ESNRAIINEI  NNSQLDWILG  QNPVGVSFVS  GYGDNSVKYP  FSIMYRTDGL  PGVPKGYLVG720
GPNKYSNDIT  VGNQISRFAA  KNYTDNFQEW  TTNEHTVYWN  SGLVFIAAFA  TGNSSNSTIN780
PTTAAFDKKT  TNQADIPVTL  TLNGNTLTDI  KNGTTSLVVD  TDYTVSGNTV  TLHKSYLAQQ840
PIGTANLTFL  FNAGSSATLS  VAVNDSSVNN  STISPPTATF  DKQTANQTDI  PVTLTLNDNT900
LIGINNGTTA  LVAGTDYTVS  GTTVTIQKAY  LASQPVGTTT  LTFNFSAGAS  ANLAVSVVDT960
SSTGSGSITV  QQYNSPVTAT  SNSLNPRIKL  KNTGTTAINL  SDVKLHYYYT  IDGEKDQNFW1020
CDWSTVGSSN  VTGAFVKLPA  PLTGADHYLE  LGFTSGAGSL  AAGASIELQI  RMNKTDWTNY1080
TQTGDYSFDP  TSSTYTDWSH  TTGYIAGALQ  WGTEPQ1116

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help