Information for CAZyme ID: AWI34020.1
Basic Information
| GenBank ID | AWI34020.1 |
| Family | GT107 |
| Sequence Length | 1045 |
| UniProt ID | A0A2U8FCP1(100,100) |
| Average pLDDT? | 87.67 |
| CAZy50 ID | 12416 |
| CAZy50 Rep | Yes, AWI34020.1 |
| Structure Cluster | SC_GT107_clus10 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 135569 |
| Kingdom | Bacteria |
| Phylum | Campylobacterota |
| Class | Epsilonproteobacteria |
| Order | Campylobacterales |
| Family | Helicobacteraceae |
| Genus | Helicobacter |
| Species | Helicobacter apodemus |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MLSLIIPVFY KNADSFIYKR ALELIEKFKE KETFEVIFAD CSKDCLLKSN YTHIKILHSP | 60 |
| SKARIFSPAY ARNAAVNLAT QKYLFFYDVD MDYASDFESL LSQEIESKLE SGKERFISLP | 120 |
| FLYLTFEGTK AFENTRDFTT LLISFLKGEN HLVESLSANS SAIILKKEYF ESLGGFREGF | 180 |
| LGHGGEDFEF LHRLAALNPH SQKPKDYYTD VRHQFLGDAK GFRAYLSFYS LPYFFKGLVL | 240 |
| LHRWHSRPLM NIFYFRRKPN EALLLESMRC FDIQNANCVW HSHNPTKDLR LFILSLMNCY | 300 |
| GYEKEDYSGF FQLGKGVKPR KKPIGGKIRK LLTRPKEFFS DSALFQHIGH LKIPTFIYLW | 360 |
| AFYDFIKPNR AYPKELLGDC LPIFPRQSNL TKDSVFYGWG RKKTGWNAIV LAQKYHCKFI | 420 |
| LLEDGFIRSF DLGIKGSSSF SLVQDEVGIY YDATSPSALE NLLNTYDFKS DSMLINTAKE | 480 |
| AMELVVKHNI SKYNCFKEVP QDYFKPCKKR VLIIAQTNKD SSLLYGYGEK FSTKEMIEDA | 540 |
| ALENPNAKIY LKIHPDVLSG KRQSDIESHK IPPFCEVITE DFNPLSLLKY FSKVYTKTSQ | 600 |
| MGFEALFVGC ECVCYGMPFY AGWGLTIDKQ TSPRRNRKLS LEEVFAASYI LYTQYYNPIY | 660 |
| QHKSDILDTI YTVIRYKHLY VKTSHKAYFF GFSYWKHNFI KPFVRNYSPQ NLIFINPISA | 720 |
| SPLEVALKKG LDLTSDIFIW GRKSFKEVES YAKKNGLKII RVEDGFIRSL SLGSDLTRPF | 780 |
| SLVFDNIGIY FDPTQPSRLE HILQNTSFPP ALIEEAKLLK KEILKSKISK YNIDSHKTLN | 840 |
| LSQDRIIILV TGQVEDDASI AYGSPGETNL SLLKQVRKEN PQSYILYKPH PDVLSGNRIG | 900 |
| QIAPQIALKY CDEIIDNVSL SSAIEVVDEV HTLTSLSGFE ALLYGKKVVT YGMPFYAGWG | 960 |
| LTIDKQTNPR RNRKLNLEEL IAGAYILYPQ YIHPKTLQTC SPNVLIKALQ EEKTKINKNK | 1020 |
| LYAMKYKIYS FLSRKAQRLC LYLKL | 1045 |
Predicted 3D structure by AlphaFold2 with pLDDT = 87.67 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MLSLIIPVFY KNADSFIYKR ALELIEKFKE KETFEVIFAD CSKDCLLKSN YTHIKILHSP | 60 |
| SKARIFSPAY ARNAAVNLAT QKYLFFYDVD MDYASDFESL LSQEIESKLE SGKERFISLP | 120 |
| FLYLTFEGTK AFENTRDFTT LLISFLKGEN HLVESLSANS SAIILKKEYF ESLGGFREGF | 180 |
| LGHGGEDFEF LHRLAALNPH SQKPKDYYTD VRHQFLGDAK GFRAYLSFYS LPYFFKGLVL | 240 |
| LHRWHSRPLM NIFYFRRKPN EALLLESMRC FDIQNANCVW HSHNPTKDLR LFILSLMNCY | 300 |
| GYEKEDYSGF FQLGKGVKPR KKPIGGKIRK LLTRPKEFFS DSALFQHIGH LKIPTFIYLW | 360 |
| AFYDFIKPNR AYPKELLGDC LPIFPRQSNL TKDSVFYGWG RKKTGWNAIV LAQKYHCKFI | 420 |
| LLEDGFIRSF DLGIKGSSSF SLVQDEVGIY YDATSPSALE NLLNTYDFKS DSMLINTAKE | 480 |
| AMELVVKHNI SKYNCFKEVP QDYFKPCKKR VLIIAQTNKD SSLLYGYGEK FSTKEMIEDA | 540 |
| ALENPNAKIY LKIHPDVLSG KRQSDIESHK IPPFCEVITE DFNPLSLLKY FSKVYTKTSQ | 600 |
| MGFEALFVGC ECVCYGMPFY AGWGLTIDKQ TSPRRNRKLS LEEVFAASYI LYTQYYNPIY | 660 |
| QHKSDILDTI YTVIRYKHLY VKTSHKAYFF GFSYWKHNFI KPFVRNYSPQ NLIFINPISA | 720 |
| SPLEVALKKG LDLTSDIFIW GRKSFKEVES YAKKNGLKII RVEDGFIRSL SLGSDLTRPF | 780 |
| SLVFDNIGIY FDPTQPSRLE HILQNTSFPP ALIEEAKLLK KEILKSKISK YNIDSHKTLN | 840 |
| LSQDRIIILV TGQVEDDASI AYGSPGETNL SLLKQVRKEN PQSYILYKPH PDVLSGNRIG | 900 |
| QIAPQIALKY CDEIIDNVSL SSAIEVVDEV HTLTSLSGFE ALLYGKKVVT YGMPFYAGWG | 960 |
| LTIDKQTNPR RNRKLNLEEL IAGAYILYPQ YIHPKTLQTC SPNVLIKALQ EEKTKINKNK | 1020 |
| LYAMKYKIYS FLSRKAQRLC LYLKL | 1045 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.