CAZyme3D

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Entry ID

Information for CAZyme ID: AWB65644.1

Basic Information

GenBank IDAWB65644.1
FamilyGH50
Sequence Length772
UniProt IDA0A2S0VN50(100,100)Download
Average pLDDT?93.28
CAZy50 ID30285
CAZy50 RepYes, AWB65644.1
Structure ClusterSC_GH50_clus18
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2172099
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusSaccharobesus
SpeciesSaccharobesus litoralis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNLQTLTGL  MLMTGLTACS  LQQTTGSSAE  STNSNTLLTL  VDFESDHYKT  MLTVTNGSSQ60
LVTDNGQGVS  QGKQALQLDM  AAKQNYLTAF  TLAPQDNSTW  DWSQYQNFSL  AIDITNPLDE120
STHMYLEVAD  SDGKLHRRSV  NVGKNSSQTY  HVELSGYDLG  IESGMRANPD  AFETNAKPFL180
YRWGATKEID  LSAVKHIQFS  AESLLSDRRF  IIDNIRLVQN  PKYDQAYLKG  LVDEYGQAIT240
AKFPQKVSND  QDLAARTKRE  LSHLSDKLFS  DRSQYGGWAQ  GPKLEATGYF  RTTKYKGKWA300
LVDPEGYLFF  SNGIANVRMA  NTSTMTGIDF  DKALIPQRSK  DDLTPEDSVG  LNRITGKALS360
TRHVNSEMRN  NMFSWLPDYH  EPLAKHYGYR  REAHIGAVES  GETYSFYQAN  LERKYGDNFM420
QTWKDITLKR  MRNWGFTSFG  NWIDPMFYHE  NQLPYFANGW  IIGNFKKVSS  GADYWAPMPD480
PFDPLFAERV  RATVKQVASE  VQNSPWCIGV  FVDNEKSWGR  MGSIETQYGI  VINTLGRATT540
DSPTKAHYSQ  LLRQQYQTID  KLNASWNSQI  ASWQAFDQGV  KVKDFTDSQV  KDFSTLLSAY600
ADQYFKIVRQ  ETKQQMPNHL  YMGARFAPWG  MTPEVLNAAV  KYTDVMSFNY  YREGLHPEQW660
AFLEEIDMPS  VIGEFHFGAD  DTGLYHPGAV  LAQDQQDRAQ  KYQGYLNSVI  DNPYMVGAHW720
FQYVDSPTTG  RAHDGENYNV  GFVTSADIPY  QPLVDKVKEV  NGYLYQRKFG  NQ772

Predicted 3D structure by AlphaFold2 with pLDDT = 93.28 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKNLQTLTGL  MLMTGLTACS  LQQTTGSSAE  STNSNTLLTL  VDFESDHYKT  MLTVTNGSSQ60
LVTDNGQGVS  QGKQALQLDM  AAKQNYLTAF  TLAPQDNSTW  DWSQYQNFSL  AIDITNPLDE120
STHMYLEVAD  SDGKLHRRSV  NVGKNSSQTY  HVELSGYDLG  IESGMRANPD  AFETNAKPFL180
YRWGATKEID  LSAVKHIQFS  AESLLSDRRF  IIDNIRLVQN  PKYDQAYLKG  LVDEYGQAIT240
AKFPQKVSND  QDLAARTKRE  LSHLSDKLFS  DRSQYGGWAQ  GPKLEATGYF  RTTKYKGKWA300
LVDPEGYLFF  SNGIANVRMA  NTSTMTGIDF  DKALIPQRSK  DDLTPEDSVG  LNRITGKALS360
TRHVNSEMRN  NMFSWLPDYH  EPLAKHYGYR  REAHIGAVES  GETYSFYQAN  LERKYGDNFM420
QTWKDITLKR  MRNWGFTSFG  NWIDPMFYHE  NQLPYFANGW  IIGNFKKVSS  GADYWAPMPD480
PFDPLFAERV  RATVKQVASE  VQNSPWCIGV  FVDNEKSWGR  MGSIETQYGI  VINTLGRATT540
DSPTKAHYSQ  LLRQQYQTID  KLNASWNSQI  ASWQAFDQGV  KVKDFTDSQV  KDFSTLLSAY600
ADQYFKIVRQ  ETKQQMPNHL  YMGARFAPWG  MTPEVLNAAV  KYTDVMSFNY  YREGLHPEQW660
AFLEEIDMPS  VIGEFHFGAD  DTGLYHPGAV  LAQDQQDRAQ  KYQGYLNSVI  DNPYMVGAHW720
FQYVDSPTTG  RAHDGENYNV  GFVTSADIPY  QPLVDKVKEV  NGYLYQRKFG  NQ772

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(97-765)

MKNLQTLTGL  MLMTGLTACS  LQQTTGSSAE  STNSNTLLTL  VDFESDHYKT  MLTVTNGSSQ60
LVTDNGQGVS  QGKQALQLDM  AAKQNYLTAF  TLAPQDNSTW  DWSQYQNFSL  AIDITNPLDE120
STHMYLEVAD  SDGKLHRRSV  NVGKNSSQTY  HVELSGYDLG  IESGMRANPD  AFETNAKPFL180
YRWGATKEID  LSAVKHIQFS  AESLLSDRRF  IIDNIRLVQN  PKYDQAYLKG  LVDEYGQAIT240
AKFPQKVSND  QDLAARTKRE  LSHLSDKLFS  DRSQYGGWAQ  GPKLEATGYF  RTTKYKGKWA300
LVDPEGYLFF  SNGIANVRMA  NTSTMTGIDF  DKALIPQRSK  DDLTPEDSVG  LNRITGKALS360
TRHVNSEMRN  NMFSWLPDYH  EPLAKHYGYR  REAHIGAVES  GETYSFYQAN  LERKYGDNFM420
QTWKDITLKR  MRNWGFTSFG  NWIDPMFYHE  NQLPYFANGW  IIGNFKKVSS  GADYWAPMPD480
PFDPLFAERV  RATVKQVASE  VQNSPWCIGV  FVDNEKSWGR  MGSIETQYGI  VINTLGRATT540
DSPTKAHYSQ  LLRQQYQTID  KLNASWNSQI  ASWQAFDQGV  KVKDFTDSQV  KDFSTLLSAY600
ADQYFKIVRQ  ETKQQMPNHL  YMGARFAPWG  MTPEVLNAAV  KYTDVMSFNY  YREGLHPEQW660
AFLEEIDMPS  VIGEFHFGAD  DTGLYHPGAV  LAQDQQDRAQ  KYQGYLNSVI  DNPYMVGAHW720
FQYVDSPTTG  RAHDGENYNV  GFVTSADIPY  QPLVDKVKEV  NGYLYQRKFG  NQ772

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help