CAZyme3D

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Entry ID

Information for CAZyme ID: AVO49526.1

Basic Information

GenBank IDAVO49526.1
FamilyGH8
Sequence Length418
UniProt IDA0A2R3QCN1(100,100)Download
Average pLDDT?90.13
CAZy50 ID89936
CAZy50 RepYes, AVO49526.1
Structure ClusterSC_GH8_clus48
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2109913
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusMelaminivora
SpeciesMelaminivora suipulveris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPTACPPATP  PAPLNVRRPR  HRRAAALAAA  WALVSVPALA  ADDCAAAAAW  PLWQQFAQRF60
MQADGRVIDY  SVAQQHSTSE  GQSYAMFFAL  VARDRERFDK  LWNWSVANLS  GGDVAAQLPA120
WQWGRKDDGS  WGVVDANAAS  DANLWFAYAL  AEAGRVWAEP  RYTAQAQALV  ALIAKHEVAE180
LPGLGATLLP  ATQGFMIGPR  TWRLNPSYLP  VPLARAMQQL  DPKGPWKAVL  DSHARMLGET240
TPKGFVADWV  AWHVPEGGGT  GAFITDPQKS  DVGSYDAIRA  YLWAGMTPRS  DPLAPLLQKR300
LGGMASLLQG  GASVPPEQVH  VSIGHVDGQA  PVGFSAALLP  YLQAAGAQGA  LKTQQERVRR360
ELLEAPKDAP  ARYYDQVLGL  FGTGFMEQRY  QFLPTGRLQL  RWEKACPQKG  RSATTTTR418

Predicted 3D structure by AlphaFold2 with pLDDT = 90.13 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPTACPPATP  PAPLNVRRPR  HRRAAALAAA  WALVSVPALA  ADDCAAAAAW  PLWQQFAQRF60
MQADGRVIDY  SVAQQHSTSE  GQSYAMFFAL  VARDRERFDK  LWNWSVANLS  GGDVAAQLPA120
WQWGRKDDGS  WGVVDANAAS  DANLWFAYAL  AEAGRVWAEP  RYTAQAQALV  ALIAKHEVAE180
LPGLGATLLP  ATQGFMIGPR  TWRLNPSYLP  VPLARAMQQL  DPKGPWKAVL  DSHARMLGET240
TPKGFVADWV  AWHVPEGGGT  GAFITDPQKS  DVGSYDAIRA  YLWAGMTPRS  DPLAPLLQKR300
LGGMASLLQG  GASVPPEQVH  VSIGHVDGQA  PVGFSAALLP  YLQAAGAQGA  LKTQQERVRR360
ELLEAPKDAP  ARYYDQVLGL  FGTGFMEQRY  QFLPTGRLQL  RWEKACPQKG  RSATTTTR418

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(50-385)

MPTACPPATP  PAPLNVRRPR  HRRAAALAAA  WALVSVPALA  ADDCAAAAAW  PLWQQFAQRF60
MQADGRVIDY  SVAQQHSTSE  GQSYAMFFAL  VARDRERFDK  LWNWSVANLS  GGDVAAQLPA120
WQWGRKDDGS  WGVVDANAAS  DANLWFAYAL  AEAGRVWAEP  RYTAQAQALV  ALIAKHEVAE180
LPGLGATLLP  ATQGFMIGPR  TWRLNPSYLP  VPLARAMQQL  DPKGPWKAVL  DSHARMLGET240
TPKGFVADWV  AWHVPEGGGT  GAFITDPQKS  DVGSYDAIRA  YLWAGMTPRS  DPLAPLLQKR300
LGGMASLLQG  GASVPPEQVH  VSIGHVDGQA  PVGFSAALLP  YLQAAGAQGA  LKTQQERVRR360
ELLEAPKDAP  ARYYDQVLGL  FGTGFMEQRY  QFLPTGRLQL  RWEKACPQKG  RSATTTTR418

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help