CAZyme3D

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Entry ID

Information for CAZyme ID: AVM45729.1

Basic Information

GenBank IDAVM45729.1
FamilyGH78
Sequence Length548
UniProt IDA0A2S0KXK3(100,100)Download
Average pLDDT?95.51
CAZy50 ID59840
CAZy50 RepYes, AVM45729.1
Structure ClusterSC_GH78_clus79
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2094242
KingdomBacteria
PhylumLentisphaerota
ClassLentisphaeria
OrderVictivallales
Family
Genus
SpeciesVictivallales bacterium CCUG 44730

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNGNSMKKIA  YANAVADDKV  RRFVPPVRVV  RESAGVSDSA  ALLDGVHTQS  FVHFNPRECI60
LPPGGEIILD  FGLELHGLLT  VTTGCMKLSR  ARITFGESVS  ETLGTPTQDH  AIHQELLSLP120
QLGQVNFGQT  AFRFVRLEIP  ADAPEVRLIG  VVATAIYRDW  EYRGTFLSDD  ERLNRIWEVG180
AYTVHLNCQD  YIYDGVKRDR  LVWMGDLYPE  IRTILAAFDE  TALVEKSLDF  VRDHTPDDKW240
MNTASSYSCW  WVICQRDFYL  YRGNYAYLRE  QKSALSKLLN  RLLACVAPDG  SEALTEWRFL300
DWSTADDDTL  KHAGLQGLLA  WTFDCGADLA  SELNDPRLAL  RCRVAASKLR  TVAPDCRGNK360
IAAAMQILGG  VGDARKLNDE  IMRNRPDHGI  STFYGYFVLL  ARAEAGDVAG  ALDVIRSYWG420
GMLDFGATTF  WEDFDLEWTR  NAYGIDQLPV  PGKDDIHGDF  GKHCYTGLRH  SLCHGWAGGP480
AAFLTEKVLG  IRPAAPGFVQ  AKIEPCLGGL  TRVEGSQPTP  FGEIELSVRK  IGNKERRLLK540
LPKEVREV548

Predicted 3D structure by AlphaFold2 with pLDDT = 95.51 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNGNSMKKIA  YANAVADDKV  RRFVPPVRVV  RESAGVSDSA  ALLDGVHTQS  FVHFNPRECI60
LPPGGEIILD  FGLELHGLLT  VTTGCMKLSR  ARITFGESVS  ETLGTPTQDH  AIHQELLSLP120
QLGQVNFGQT  AFRFVRLEIP  ADAPEVRLIG  VVATAIYRDW  EYRGTFLSDD  ERLNRIWEVG180
AYTVHLNCQD  YIYDGVKRDR  LVWMGDLYPE  IRTILAAFDE  TALVEKSLDF  VRDHTPDDKW240
MNTASSYSCW  WVICQRDFYL  YRGNYAYLRE  QKSALSKLLN  RLLACVAPDG  SEALTEWRFL300
DWSTADDDTL  KHAGLQGLLA  WTFDCGADLA  SELNDPRLAL  RCRVAASKLR  TVAPDCRGNK360
IAAAMQILGG  VGDARKLNDE  IMRNRPDHGI  STFYGYFVLL  ARAEAGDVAG  ALDVIRSYWG420
GMLDFGATTF  WEDFDLEWTR  NAYGIDQLPV  PGKDDIHGDF  GKHCYTGLRH  SLCHGWAGGP480
AAFLTEKVLG  IRPAAPGFVQ  AKIEPCLGGL  TRVEGSQPTP  FGEIELSVRK  IGNKERRLLK540
LPKEVREV548

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH78(63-536)

MNGNSMKKIA  YANAVADDKV  RRFVPPVRVV  RESAGVSDSA  ALLDGVHTQS  FVHFNPRECI60
LPPGGEIILD  FGLELHGLLT  VTTGCMKLSR  ARITFGESVS  ETLGTPTQDH  AIHQELLSLP120
QLGQVNFGQT  AFRFVRLEIP  ADAPEVRLIG  VVATAIYRDW  EYRGTFLSDD  ERLNRIWEVG180
AYTVHLNCQD  YIYDGVKRDR  LVWMGDLYPE  IRTILAAFDE  TALVEKSLDF  VRDHTPDDKW240
MNTASSYSCW  WVICQRDFYL  YRGNYAYLRE  QKSALSKLLN  RLLACVAPDG  SEALTEWRFL300
DWSTADDDTL  KHAGLQGLLA  WTFDCGADLA  SELNDPRLAL  RCRVAASKLR  TVAPDCRGNK360
IAAAMQILGG  VGDARKLNDE  IMRNRPDHGI  STFYGYFVLL  ARAEAGDVAG  ALDVIRSYWG420
GMLDFGATTF  WEDFDLEWTR  NAYGIDQLPV  PGKDDIHGDF  GKHCYTGLRH  SLCHGWAGGP480
AAFLTEKVLG  IRPAAPGFVQ  AKIEPCLGGL  TRVEGSQPTP  FGEIELSVRK  IGNKERRLLK540
LPKEVREV548

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help