CAZyme3D

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Entry ID

Information for CAZyme ID: AUX42204.1

Basic Information

GenBank IDAUX42204.1
FamilyGH5_5
Sequence Length381
UniProt IDA0A2L0ESE5(100,100)Download
Average pLDDT?88.57
CAZy50 ID110870
CAZy50 RepYes, AUX42204.1
Structure ClusterSC_GH5_clus115
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID56
KingdomBacteria
PhylumMyxococcota
Class
OrderPolyangiales
FamilyPolyangiaceae
GenusSorangium
SpeciesSorangium cellulosum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRKAVAWGVV  GAGLAVLGAC  RGEDAEKTRE  TGIAGNAAAG  ANAPVGAELL  GQPLSMRGVS60
LAGAEFAVDP  FGKGNLPGTP  GVHYHYPDPA  FSKGYTSADY  FLAKGMNTFR  VPFRWERLQP120
VRNQPLNAAE  LNRLTTTVNN  LVAKGAYVVL  DVHNYARYGT  GVVGAEVPIA  DFAEFWGRVA180
VEFKGNTKVV  FALMNEPHDM  PTEVWIEAAN  AAIVSIRNTG  ATNLILVPGN  GWSGAHSFNA240
TFYGTSNAEA  LLKIVDPKQY  VAFEVHQHLD  GDSSGKSATC  VSETVGVERL  QVFTEWLRKH300
RKKGFLGEFS  GGSGAVCLKA  ITNVVVYLEQ  NKDVYVGWTY  WAAGPAWDSY  FTSLEPRGGV360
DTPQMISLQA  HLSASVKASV  K381

Predicted 3D structure by AlphaFold2 with pLDDT = 88.57 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRKAVAWGVV  GAGLAVLGAC  RGEDAEKTRE  TGIAGNAAAG  ANAPVGAELL  GQPLSMRGVS60
LAGAEFAVDP  FGKGNLPGTP  GVHYHYPDPA  FSKGYTSADY  FLAKGMNTFR  VPFRWERLQP120
VRNQPLNAAE  LNRLTTTVNN  LVAKGAYVVL  DVHNYARYGT  GVVGAEVPIA  DFAEFWGRVA180
VEFKGNTKVV  FALMNEPHDM  PTEVWIEAAN  AAIVSIRNTG  ATNLILVPGN  GWSGAHSFNA240
TFYGTSNAEA  LLKIVDPKQY  VAFEVHQHLD  GDSSGKSATC  VSETVGVERL  QVFTEWLRKH300
RKKGFLGEFS  GGSGAVCLKA  ITNVVVYLEQ  NKDVYVGWTY  WAAGPAWDSY  FTSLEPRGGV360
DTPQMISLQA  HLSASVKASV  K381

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_5(57-350)

MRKAVAWGVV  GAGLAVLGAC  RGEDAEKTRE  TGIAGNAAAG  ANAPVGAELL  GQPLSMRGVS60
LAGAEFAVDP  FGKGNLPGTP  GVHYHYPDPA  FSKGYTSADY  FLAKGMNTFR  VPFRWERLQP120
VRNQPLNAAE  LNRLTTTVNN  LVAKGAYVVL  DVHNYARYGT  GVVGAEVPIA  DFAEFWGRVA180
VEFKGNTKVV  FALMNEPHDM  PTEVWIEAAN  AAIVSIRNTG  ATNLILVPGN  GWSGAHSFNA240
TFYGTSNAEA  LLKIVDPKQY  VAFEVHQHLD  GDSSGKSATC  VSETVGVERL  QVFTEWLRKH300
RKKGFLGEFS  GGSGAVCLKA  ITNVVVYLEQ  NKDVYVGWTY  WAAGPAWDSY  FTSLEPRGGV360
DTPQMISLQA  HLSASVKASV  K381

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help