CAZyme3D

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Entry ID

Information for CAZyme ID: AUB31244.1

Basic Information

GenBank IDAUB31244.1
FamilyGH85
Sequence Length885
UniProt IDA0A2K8SCQ9(100,100)Download
Average pLDDT?91.27
CAZy50 ID20370
CAZy50 RepYes, AUB31244.1
Structure ClusterSC_GH85_clus54
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1336749
KingdomBacteria
PhylumMycoplasmatota
ClassMollicutes
OrderEntomoplasmatales
FamilySpiroplasmataceae
GenusSpiroplasma
SpeciesSpiroplasma floricola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKLLSLFLS  IPLLISPTTS  LISCSIGSRG  TNYFLSNLPN  FNWNDPELGD  GIIYDNYSNP60
VNVNLTNSNI  ENVEPKNLNS  FLNYDEFNTG  FQWNQNIKKQ  AVTGVPLNKG  FMPNGNFASD120
FGVESKAQSY  RRLNGILDWN  PNTDNDAKFN  TSNEELKQRV  VVPNRISANQ  DERLKYNPLG180
FSSRKHRTFD  NTIVGTKNPF  ENSTTNWQYI  NEFINWSGSW  FEGPIVPPPA  DVVDFAHKNG240
TPVYGNIFLD  GYHGLTREMI  RSFILKDNKG  NYKIVDVLIN  IAKSLGFDGW  FINNEANGQL300
PNGTILDYNE  MFEIIRQFQQ  KTATSKDEKI  KNLELYYYRN  DATLAENNGV  YSDKEMVKMA360
DANYLTGDNK  KTIKMQVNFG  ELPESSKYFR  EEHKEYQQND  IFTMVDQGFN  NFLYGSFDFK420
ELAYKYDRAK  QEYDPSVYAG  FSSYLDNGSG  IFANEAYNYV  KNNSNDEIRN  YLFANQVGNL480
FNDIQFSGTN  LFVSSTNKGL  SKNELSQKLK  SSEFNRNAFI  ADPRVKLENK  GSLQRDVPNS540
IFDTVYDYKS  NNSKTNTNSY  GIADLIPEQT  VITDQNLLKS  DFKTNFSTGN  GIKFKTDEYT600
IEDYPWTNRR  LADVLPTYRW  RIYDKENSNR  ALPIDQFYGG  FDYDEVYNKG  NSIAIGSGFD660
EKGKILPVNE  WDTNKTYNWD  ILGTDFSNKD  KKIELVYKTD  SDSLENMKLN  LTIVNKETNS720
TRKKEVENKN  YKKLNSDWTK  IESDLNNLNL  STSETIAGIG  LTFKPKKKEF  KLNVGEVQII780
NQSSFYKNLK  TENQNINLEV  EYAIKRKNLE  TYNLRLSWEY  FKDKNFDYFE  ILTFFDNKWY840
RVGETTSTNY  FLKDLKAQED  KILLCIRPKS  KTNIESENYK  FFINL885

Predicted 3D structure by AlphaFold2 with pLDDT = 91.27 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKLLSLFLS  IPLLISPTTS  LISCSIGSRG  TNYFLSNLPN  FNWNDPELGD  GIIYDNYSNP60
VNVNLTNSNI  ENVEPKNLNS  FLNYDEFNTG  FQWNQNIKKQ  AVTGVPLNKG  FMPNGNFASD120
FGVESKAQSY  RRLNGILDWN  PNTDNDAKFN  TSNEELKQRV  VVPNRISANQ  DERLKYNPLG180
FSSRKHRTFD  NTIVGTKNPF  ENSTTNWQYI  NEFINWSGSW  FEGPIVPPPA  DVVDFAHKNG240
TPVYGNIFLD  GYHGLTREMI  RSFILKDNKG  NYKIVDVLIN  IAKSLGFDGW  FINNEANGQL300
PNGTILDYNE  MFEIIRQFQQ  KTATSKDEKI  KNLELYYYRN  DATLAENNGV  YSDKEMVKMA360
DANYLTGDNK  KTIKMQVNFG  ELPESSKYFR  EEHKEYQQND  IFTMVDQGFN  NFLYGSFDFK420
ELAYKYDRAK  QEYDPSVYAG  FSSYLDNGSG  IFANEAYNYV  KNNSNDEIRN  YLFANQVGNL480
FNDIQFSGTN  LFVSSTNKGL  SKNELSQKLK  SSEFNRNAFI  ADPRVKLENK  GSLQRDVPNS540
IFDTVYDYKS  NNSKTNTNSY  GIADLIPEQT  VITDQNLLKS  DFKTNFSTGN  GIKFKTDEYT600
IEDYPWTNRR  LADVLPTYRW  RIYDKENSNR  ALPIDQFYGG  FDYDEVYNKG  NSIAIGSGFD660
EKGKILPVNE  WDTNKTYNWD  ILGTDFSNKD  KKIELVYKTD  SDSLENMKLN  LTIVNKETNS720
TRKKEVENKN  YKKLNSDWTK  IESDLNNLNL  STSETIAGIG  LTFKPKKKEF  KLNVGEVQII780
NQSSFYKNLK  TENQNINLEV  EYAIKRKNLE  TYNLRLSWEY  FKDKNFDYFE  ILTFFDNKWY840
RVGETTSTNY  FLKDLKAQED  KILLCIRPKS  KTNIESENYK  FFINL885

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH85(187-422)+GH85(444-594)

MKKLLSLFLS  IPLLISPTTS  LISCSIGSRG  TNYFLSNLPN  FNWNDPELGD  GIIYDNYSNP60
VNVNLTNSNI  ENVEPKNLNS  FLNYDEFNTG  FQWNQNIKKQ  AVTGVPLNKG  FMPNGNFASD120
FGVESKAQSY  RRLNGILDWN  PNTDNDAKFN  TSNEELKQRV  VVPNRISANQ  DERLKYNPLG180
FSSRKHRTFD  NTIVGTKNPF  ENSTTNWQYI  NEFINWSGSW  FEGPIVPPPA  DVVDFAHKNG240
TPVYGNIFLD  GYHGLTREMI  RSFILKDNKG  NYKIVDVLIN  IAKSLGFDGW  FINNEANGQL300
PNGTILDYNE  MFEIIRQFQQ  KTATSKDEKI  KNLELYYYRN  DATLAENNGV  YSDKEMVKMA360
DANYLTGDNK  KTIKMQVNFG  ELPESSKYFR  EEHKEYQQND  IFTMVDQGFN  NFLYGSFDFK420
ELAYKYDRAK  QEYDPSVYAG  FSSYLDNGSG  IFANEAYNYV  KNNSNDEIRN  YLFANQVGNL480
FNDIQFSGTN  LFVSSTNKGL  SKNELSQKLK  SSEFNRNAFI  ADPRVKLENK  GSLQRDVPNS540
IFDTVYDYKS  NNSKTNTNSY  GIADLIPEQT  VITDQNLLKS  DFKTNFSTGN  GIKFKTDEYT600
IEDYPWTNRR  LADVLPTYRW  RIYDKENSNR  ALPIDQFYGG  FDYDEVYNKG  NSIAIGSGFD660
EKGKILPVNE  WDTNKTYNWD  ILGTDFSNKD  KKIELVYKTD  SDSLENMKLN  LTIVNKETNS720
TRKKEVENKN  YKKLNSDWTK  IESDLNNLNL  STSETIAGIG  LTFKPKKKEF  KLNVGEVQII780
NQSSFYKNLK  TENQNINLEV  EYAIKRKNLE  TYNLRLSWEY  FKDKNFDYFE  ILTFFDNKWY840
RVGETTSTNY  FLKDLKAQED  KILLCIRPKS  KTNIESENYK  FFINL885

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help