CAZyme3D

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Entry ID

Information for CAZyme ID: ATY59959.1

Basic Information

GenBank IDATY59959.1
FamilyGT31
Sequence Length1070
UniProt IDA0A2H4SA22(100,100)Download
Average pLDDT?75.97
CAZy50 ID11430
CAZy50 RepYes, ATY59959.1
Structure ClusterSC_GT31_clus27
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID73501
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderHypocreales
FamilyCordycipitaceae
GenusCordyceps
SpeciesCordyceps militaris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPDKSVTVVS  YAAGASLAAA  ALIYVFGPTF  AIDHDGASTK  KKTIVGLRNQ  ANDCFINSVL60
QALAGLGDLR  IYLIRETHRR  SIEDPAVYAN  LVQPSLSDED  GSGGGEMPLW  KIQGLQDGLV120
THGLKDMIDH  LNERPIAKKA  ISPFPFVRVL  EVAFKQRISR  QQQDAQEFLQ  IVAERLKDEY180
HAGQRARLHA  RAAVNGSGSN  STTNSNPEQS  DSEKDEKQAA  TNGTPDGIAA  SSTNGTNSQS240
NSDTDSLLPS  TASPQSTRPL  PIELEDGFPM  EGKYESHLEC  QTCGYKTKPR  EETFCTITLA300
VPQVMSTSLG  SCFDGIFKTE  YIDDFKCEMC  RLVQTVANLE  HEVSRSTSES  FKANALDSIA360
KLNQAIRTDP  EQPPEGVDLG  DMRYAPKRRI  SKTTRMTIFP  KILAIHLSRS  IYGVGQMTQK420
NSAKVAFPEQ  LPLGGLAEQR  RYKLLGMVTH  RGGHNSGHYE  AFRRQNVPPH  FPNQNTFMQS480
EVYSKTPTPL  STPLIHAKNA  DSPAISTPDL  LSPASTNGSS  TPSLDSVPMP  APRSVPTAPE540
PEGSSPSPSI  SGRDRDTDSS  SLRSVAASTK  SALSRLTSGS  IKRAKPKRAK  QHLDRWWRVS600
DEKVREAKTS  EVLSMQKEVY  LLFYELEKRV  RKRLLQTAIL  GLVILSVSYI  VLPPDSSIRL660
ALRFNAVRAS  AAVRGATEDR  DAWLRQPAPY  KLDLREDVGY  LIKTGYGTRH  RVPLQLAALQ720
GSYGGGLLGE  EGKDYVVVGD  WTTVDGKDAK  AIGVPVHDVL  KMVREYGDGD  WRAHHRLKKY780
QTLQSAIQAG  DEETALGIGR  SVGWELDALK  FAPGMELMYK  TMPNKKWYLI  LDDDTFVVKS840
TLNLLLTHLN  PENPHYIGNA  VGDFRGRFAH  GGSAIIISGE  AMRQLFRRKD  VVRQAYVESL900
DEKWGDRLVA  TTFLKLGIYL  EERYAHHFNG  ESPEETRITR  EKYCAPILSF  HSLRTAAATT960
RVSKVVGTAI  KPVRWGELME  LFRPAAAARG  QDHVGPADKQ  VRTWGLVKKA  SDCQRKCEVE1020
NSKWCLAWTY  EARKEACQAS  PWMVPGADGA  EGKVSGYNKE  AVKRMQAGCA  1070

Predicted 3D structure by AlphaFold2 with pLDDT = 75.97 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPDKSVTVVS  YAAGASLAAA  ALIYVFGPTF  AIDHDGASTK  KKTIVGLRNQ  ANDCFINSVL60
QALAGLGDLR  IYLIRETHRR  SIEDPAVYAN  LVQPSLSDED  GSGGGEMPLW  KIQGLQDGLV120
THGLKDMIDH  LNERPIAKKA  ISPFPFVRVL  EVAFKQRISR  QQQDAQEFLQ  IVAERLKDEY180
HAGQRARLHA  RAAVNGSGSN  STTNSNPEQS  DSEKDEKQAA  TNGTPDGIAA  SSTNGTNSQS240
NSDTDSLLPS  TASPQSTRPL  PIELEDGFPM  EGKYESHLEC  QTCGYKTKPR  EETFCTITLA300
VPQVMSTSLG  SCFDGIFKTE  YIDDFKCEMC  RLVQTVANLE  HEVSRSTSES  FKANALDSIA360
KLNQAIRTDP  EQPPEGVDLG  DMRYAPKRRI  SKTTRMTIFP  KILAIHLSRS  IYGVGQMTQK420
NSAKVAFPEQ  LPLGGLAEQR  RYKLLGMVTH  RGGHNSGHYE  AFRRQNVPPH  FPNQNTFMQS480
EVYSKTPTPL  STPLIHAKNA  DSPAISTPDL  LSPASTNGSS  TPSLDSVPMP  APRSVPTAPE540
PEGSSPSPSI  SGRDRDTDSS  SLRSVAASTK  SALSRLTSGS  IKRAKPKRAK  QHLDRWWRVS600
DEKVREAKTS  EVLSMQKEVY  LLFYELEKRV  RKRLLQTAIL  GLVILSVSYI  VLPPDSSIRL660
ALRFNAVRAS  AAVRGATEDR  DAWLRQPAPY  KLDLREDVGY  LIKTGYGTRH  RVPLQLAALQ720
GSYGGGLLGE  EGKDYVVVGD  WTTVDGKDAK  AIGVPVHDVL  KMVREYGDGD  WRAHHRLKKY780
QTLQSAIQAG  DEETALGIGR  SVGWELDALK  FAPGMELMYK  TMPNKKWYLI  LDDDTFVVKS840
TLNLLLTHLN  PENPHYIGNA  VGDFRGRFAH  GGSAIIISGE  AMRQLFRRKD  VVRQAYVESL900
DEKWGDRLVA  TTFLKLGIYL  EERYAHHFNG  ESPEETRITR  EKYCAPILSF  HSLRTAAATT960
RVSKVVGTAI  KPVRWGELME  LFRPAAAARG  QDHVGPADKQ  VRTWGLVKKA  SDCQRKCEVE1020
NSKWCLAWTY  EARKEACQAS  PWMVPGADGA  EGKVSGYNKE  AVKRMQAGCA  1070

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MPDKSVTVVS  YAAGASLAAA  ALIYVFGPTF  AIDHDGASTK  KKTIVGLRNQ  ANDCFINSVL60
QALAGLGDLR  IYLIRETHRR  SIEDPAVYAN  LVQPSLSDED  GSGGGEMPLW  KIQGLQDGLV120
THGLKDMIDH  LNERPIAKKA  ISPFPFVRVL  EVAFKQRISR  QQQDAQEFLQ  IVAERLKDEY180
HAGQRARLHA  RAAVNGSGSN  STTNSNPEQS  DSEKDEKQAA  TNGTPDGIAA  SSTNGTNSQS240
NSDTDSLLPS  TASPQSTRPL  PIELEDGFPM  EGKYESHLEC  QTCGYKTKPR  EETFCTITLA300
VPQVMSTSLG  SCFDGIFKTE  YIDDFKCEMC  RLVQTVANLE  HEVSRSTSES  FKANALDSIA360
KLNQAIRTDP  EQPPEGVDLG  DMRYAPKRRI  SKTTRMTIFP  KILAIHLSRS  IYGVGQMTQK420
NSAKVAFPEQ  LPLGGLAEQR  RYKLLGMVTH  RGGHNSGHYE  AFRRQNVPPH  FPNQNTFMQS480
EVYSKTPTPL  STPLIHAKNA  DSPAISTPDL  LSPASTNGSS  TPSLDSVPMP  APRSVPTAPE540
PEGSSPSPSI  SGRDRDTDSS  SLRSVAASTK  SALSRLTSGS  IKRAKPKRAK  QHLDRWWRVS600
DEKVREAKTS  EVLSMQKEVY  LLFYELEKRV  RKRLLQTAIL  GLVILSVSYI  VLPPDSSIRL660
ALRFNAVRAS  AAVRGATEDR  DAWLRQPAPY  KLDLREDVGY  LIKTGYGTRH  RVPLQLAALQ720
GSYGGGLLGE  EGKDYVVVGD  WTTVDGKDAK  AIGVPVHDVL  KMVREYGDGD  WRAHHRLKKY780
QTLQSAIQAG  DEETALGIGR  SVGWELDALK  FAPGMELMYK  TMPNKKWYLI  LDDDTFVVKS840
TLNLLLTHLN  PENPHYIGNA  VGDFRGRFAH  GGSAIIISGE  AMRQLFRRKD  VVRQAYVESL900
DEKWGDRLVA  TTFLKLGIYL  EERYAHHFNG  ESPEETRITR  EKYCAPILSF  HSLRTAAATT960
RVSKVVGTAI  KPVRWGELME  LFRPAAAARG  QDHVGPADKQ  VRTWGLVKKA  SDCQRKCEVE1020
NSKWCLAWTY  EARKEACQAS  PWMVPGADGA  EGKVSGYNKE  AVKRMQAGCA  1070

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help