CAZyme3D

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Entry ID

Information for CAZyme ID: ATX78052.1

Basic Information

GenBank IDATX78052.1
FamilyGT26
Sequence Length417
UniProt IDA0A2K8KTW4(100,100)Download
Average pLDDT?85.25
CAZy50 ID90668
CAZy50 RepYes, ATX78052.1
Structure ClusterSC_GT26_clus57
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1336806
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOceanospirillales
FamilySaccharospirillaceae
GenusReinekea
SpeciesReinekea forsetii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHNTDSTLQP  KLERLLDLSL  ACVTMLLLSP  LWLINVLLAV  WQHKAPLVKI  VQQDVLCRDH60
GLYRWQVGFL  PTSAALLNVA  NGSLSFVGVS  LNGGFGSIHR  ADLHNLKAGL  YSIAEIQHRV120
GLIGLTVEQS  MAHHQAQRST  SLYLKYLLKG  LFSSLLYRTA  HLRAPSSFKL  FGIRIDNLRM180
AQAVDLICAD  AAPRVGPVRR  PCNVVNFINV  NSINLAYRNR  SFRHTLNRAN  CTLADGSGVR240
LGARSMQVQL  KDNINGTDLM  PILCAQMVAQ  KRSLYLFGSA  PGVALKAAVA  LQANHPGLII300
AGVQHGHLTD  LDNDQIVEAI  NAAQADVLLV  ALGSPIQEDW  VMANRLRLKV  GTAIAVGGLF360
DFLSGNIPRA  PLWMRELGLE  WVFRLIQEPR  VKFTRYVIGN  PLFLWRAFVL  KKSQADL417

Predicted 3D structure by AlphaFold2 with pLDDT = 85.25 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MHNTDSTLQP  KLERLLDLSL  ACVTMLLLSP  LWLINVLLAV  WQHKAPLVKI  VQQDVLCRDH60
GLYRWQVGFL  PTSAALLNVA  NGSLSFVGVS  LNGGFGSIHR  ADLHNLKAGL  YSIAEIQHRV120
GLIGLTVEQS  MAHHQAQRST  SLYLKYLLKG  LFSSLLYRTA  HLRAPSSFKL  FGIRIDNLRM180
AQAVDLICAD  AAPRVGPVRR  PCNVVNFINV  NSINLAYRNR  SFRHTLNRAN  CTLADGSGVR240
LGARSMQVQL  KDNINGTDLM  PILCAQMVAQ  KRSLYLFGSA  PGVALKAAVA  LQANHPGLII300
AGVQHGHLTD  LDNDQIVEAI  NAAQADVLLV  ALGSPIQEDW  VMANRLRLKV  GTAIAVGGLF360
DFLSGNIPRA  PLWMRELGLE  WVFRLIQEPR  VKFTRYVIGN  PLFLWRAFVL  KKSQADL417

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT26(226-391)

MHNTDSTLQP  KLERLLDLSL  ACVTMLLLSP  LWLINVLLAV  WQHKAPLVKI  VQQDVLCRDH60
GLYRWQVGFL  PTSAALLNVA  NGSLSFVGVS  LNGGFGSIHR  ADLHNLKAGL  YSIAEIQHRV120
GLIGLTVEQS  MAHHQAQRST  SLYLKYLLKG  LFSSLLYRTA  HLRAPSSFKL  FGIRIDNLRM180
AQAVDLICAD  AAPRVGPVRR  PCNVVNFINV  NSINLAYRNR  SFRHTLNRAN  CTLADGSGVR240
LGARSMQVQL  KDNINGTDLM  PILCAQMVAQ  KRSLYLFGSA  PGVALKAAVA  LQANHPGLII300
AGVQHGHLTD  LDNDQIVEAI  NAAQADVLLV  ALGSPIQEDW  VMANRLRLKV  GTAIAVGGLF360
DFLSGNIPRA  PLWMRELGLE  WVFRLIQEPR  VKFTRYVIGN  PLFLWRAFVL  KKSQADL417

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help