CAZyme3D

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Entry ID

Information for CAZyme ID: ATX70933.1

Basic Information

GenBank IDATX70933.1
FamilyGH85
Sequence Length952
UniProt IDA0A2K8KGW2(100,100)Download
Average pLDDT?86.02
CAZy50 ID16518
CAZy50 RepYes, ATX70933.1
Structure ClusterSC_GH85_clus54
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2139
KingdomBacteria
PhylumMycoplasmatota
ClassMollicutes
OrderEntomoplasmatales
FamilySpiroplasmataceae
GenusSpiroplasma
SpeciesSpiroplasma clarkii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKLLVWLQI  VAIVAPTISI  VSACDIGTTS  TRPYLLSLDD  YNWAEDTGAG  AEYNFTDQDK60
TTDQVNSDEV  AIKTVANGPV  DQVFDYDKFS  TGYKTRRSIR  KQGVTGVPIV  TTFRPNGNTW120
SDYGVDSKSR  KFEYFNSVLD  WDKDNLDLKY  NTAATDIRAR  NYVAAKSTKR  QLQGVYYNRF180
HDKGNSDSSI  VGTNNPYSAL  MTNYSYVNDF  IGWAGFTNLG  WLTPLSADVT  DQLHKNGVNA240
IGLLYLSGWE  DVSREKLKKL  FELDSQGNFK  IVDILINQAL  TLNFDGWFIN  DEANGGAPDG300
SVVKQSDIYE  IIRQFNIKAA  ALERKGGKTL  TFNYYKNTNS  INKEEPAYSQ  TLAAVNGTTV360
GFGANAKNRT  KFQLDFNRLF  PGEEENFFTE  RNNGDPTYPS  RFYSMYYEGA  NTPGIGNIDI420
RKYLYKVTNK  FSEKKPELTY  DYENHTPVSF  SSFGSGAEND  IARSSFIEFS  KNAKTPFDTD480
WAWLKTQEIS  NLYNSYMYAG  YNGYLKSDAK  GFEQAFENNK  NKYNDEESYA  AMRKNMHRDA540
SYGNAIALKD  ILAIDPRVDF  DQIKNETPPT  DSNKQFFWDE  NTGVYPFSYG  YGNDFAEQTV600
LTDTKLNQYT  NAEETTTAPN  ITTSFSTGSG  MYFVDRDSAG  KLLSYASNYP  WTNNRLADVM660
PTYQWDFWKT  TQSDRTVTDN  NTVDGVKYRS  KITKAGQLNG  YFDYNNPYKK  GNSIAIGNGY720
DFNGAQGRIK  PGIWEKNSAY  NWNLMGTNLQ  TSDYTLDFKV  KAAKHDDIKS  AGLAEVVKNT780
KVLVKTSSTE  APKVIEPTSV  TPVDGGWYNV  SLNLSQAGLS  VNDQNRLAKI  GLQINTGDNT840
EFIYNVGELS  LKPNTMSAPV  VNSKIKRLSN  EATIVRDENA  SIRFNWETDN  TSNIDYYEVF900
YKYDDKWYRV  GQTNLTSYYL  RDLVAGDALT  LGIRIKYNSG  ESSQMFTGTF  KI952

Predicted 3D structure by AlphaFold2 with pLDDT = 86.02 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKLLVWLQI  VAIVAPTISI  VSACDIGTTS  TRPYLLSLDD  YNWAEDTGAG  AEYNFTDQDK60
TTDQVNSDEV  AIKTVANGPV  DQVFDYDKFS  TGYKTRRSIR  KQGVTGVPIV  TTFRPNGNTW120
SDYGVDSKSR  KFEYFNSVLD  WDKDNLDLKY  NTAATDIRAR  NYVAAKSTKR  QLQGVYYNRF180
HDKGNSDSSI  VGTNNPYSAL  MTNYSYVNDF  IGWAGFTNLG  WLTPLSADVT  DQLHKNGVNA240
IGLLYLSGWE  DVSREKLKKL  FELDSQGNFK  IVDILINQAL  TLNFDGWFIN  DEANGGAPDG300
SVVKQSDIYE  IIRQFNIKAA  ALERKGGKTL  TFNYYKNTNS  INKEEPAYSQ  TLAAVNGTTV360
GFGANAKNRT  KFQLDFNRLF  PGEEENFFTE  RNNGDPTYPS  RFYSMYYEGA  NTPGIGNIDI420
RKYLYKVTNK  FSEKKPELTY  DYENHTPVSF  SSFGSGAEND  IARSSFIEFS  KNAKTPFDTD480
WAWLKTQEIS  NLYNSYMYAG  YNGYLKSDAK  GFEQAFENNK  NKYNDEESYA  AMRKNMHRDA540
SYGNAIALKD  ILAIDPRVDF  DQIKNETPPT  DSNKQFFWDE  NTGVYPFSYG  YGNDFAEQTV600
LTDTKLNQYT  NAEETTTAPN  ITTSFSTGSG  MYFVDRDSAG  KLLSYASNYP  WTNNRLADVM660
PTYQWDFWKT  TQSDRTVTDN  NTVDGVKYRS  KITKAGQLNG  YFDYNNPYKK  GNSIAIGNGY720
DFNGAQGRIK  PGIWEKNSAY  NWNLMGTNLQ  TSDYTLDFKV  KAAKHDDIKS  AGLAEVVKNT780
KVLVKTSSTE  APKVIEPTSV  TPVDGGWYNV  SLNLSQAGLS  VNDQNRLAKI  GLQINTGDNT840
EFIYNVGELS  LKPNTMSAPV  VNSKIKRLSN  EATIVRDENA  SIRFNWETDN  TSNIDYYEVF900
YKYDDKWYRV  GQTNLTSYYL  RDLVAGDALT  LGIRIKYNSG  ESSQMFTGTF  KI952

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH85(185-356)+CBM37(879-926)

MKKLLVWLQI  VAIVAPTISI  VSACDIGTTS  TRPYLLSLDD  YNWAEDTGAG  AEYNFTDQDK60
TTDQVNSDEV  AIKTVANGPV  DQVFDYDKFS  TGYKTRRSIR  KQGVTGVPIV  TTFRPNGNTW120
SDYGVDSKSR  KFEYFNSVLD  WDKDNLDLKY  NTAATDIRAR  NYVAAKSTKR  QLQGVYYNRF180
HDKGNSDSSI  VGTNNPYSAL  MTNYSYVNDF  IGWAGFTNLG  WLTPLSADVT  DQLHKNGVNA240
IGLLYLSGWE  DVSREKLKKL  FELDSQGNFK  IVDILINQAL  TLNFDGWFIN  DEANGGAPDG300
SVVKQSDIYE  IIRQFNIKAA  ALERKGGKTL  TFNYYKNTNS  INKEEPAYSQ  TLAAVNGTTV360
GFGANAKNRT  KFQLDFNRLF  PGEEENFFTE  RNNGDPTYPS  RFYSMYYEGA  NTPGIGNIDI420
RKYLYKVTNK  FSEKKPELTY  DYENHTPVSF  SSFGSGAEND  IARSSFIEFS  KNAKTPFDTD480
WAWLKTQEIS  NLYNSYMYAG  YNGYLKSDAK  GFEQAFENNK  NKYNDEESYA  AMRKNMHRDA540
SYGNAIALKD  ILAIDPRVDF  DQIKNETPPT  DSNKQFFWDE  NTGVYPFSYG  YGNDFAEQTV600
LTDTKLNQYT  NAEETTTAPN  ITTSFSTGSG  MYFVDRDSAG  KLLSYASNYP  WTNNRLADVM660
PTYQWDFWKT  TQSDRTVTDN  NTVDGVKYRS  KITKAGQLNG  YFDYNNPYKK  GNSIAIGNGY720
DFNGAQGRIK  PGIWEKNSAY  NWNLMGTNLQ  TSDYTLDFKV  KAAKHDDIKS  AGLAEVVKNT780
KVLVKTSSTE  APKVIEPTSV  TPVDGGWYNV  SLNLSQAGLS  VNDQNRLAKI  GLQINTGDNT840
EFIYNVGELS  LKPNTMSAPV  VNSKIKRLSN  EATIVRDENA  SIRFNWETDN  TSNIDYYEVF900
YKYDDKWYRV  GQTNLTSYYL  RDLVAGDALT  LGIRIKYNSG  ESSQMFTGTF  KI952

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help