CAZyme3D

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Entry ID

Information for CAZyme ID: ATW45867.1

Basic Information

GenBank IDATW45867.1
FamilyGT52
Sequence Length322
UniProt IDT1RQ63(100,100)Download
Average pLDDT?88.70
CAZy50 ID145889
CAZy50 RepYes, ATW45867.1
Structure ClusterSC_GT52_clus8
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1117322
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusGlaesserella
SpeciesGlaesserella parasuis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNLIICMTPF  QMLMAEKIVE  KKQSEIFHLL  VFYSVWNDKY  QYYMEKVLCK  KNVFFLKKCF60
ISPNNHFSRL  YKSVLVRIYG  FLLCKKFNKV  YIANLDNPWI  RLLLSSLGKF  ELYTFDDGTA120
NIFKNSFFYK  NDSFRVNLIM  KLLFSRYTRQ  DLRKMSLVHY  TIYDNKENIV  DKDKLVYVSM180
REGIVKISPH  EVTSSKERVN  LLLGQPIDSI  FISVNDGVSV  VKKIIEVFNI  NYYYPHPRER240
FIIDGVNYIK  SKLIFEDYFV  SQFRLNVEYT  IYTFYSGAPL  SFINLPNVKI  ISIKPDICRN300
EIVQDFEIMK  SFGVEVIDYT  CQ322

Predicted 3D structure by AlphaFold2 with pLDDT = 88.70 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNLIICMTPF  QMLMAEKIVE  KKQSEIFHLL  VFYSVWNDKY  QYYMEKVLCK  KNVFFLKKCF60
ISPNNHFSRL  YKSVLVRIYG  FLLCKKFNKV  YIANLDNPWI  RLLLSSLGKF  ELYTFDDGTA120
NIFKNSFFYK  NDSFRVNLIM  KLLFSRYTRQ  DLRKMSLVHY  TIYDNKENIV  DKDKLVYVSM180
REGIVKISPH  EVTSSKERVN  LLLGQPIDSI  FISVNDGVSV  VKKIIEVFNI  NYYYPHPRER240
FIIDGVNYIK  SKLIFEDYFV  SQFRLNVEYT  IYTFYSGAPL  SFINLPNVKI  ISIKPDICRN300
EIVQDFEIMK  SFGVEVIDYT  CQ322

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT52(26-295)

MNLIICMTPF  QMLMAEKIVE  KKQSEIFHLL  VFYSVWNDKY  QYYMEKVLCK  KNVFFLKKCF60
ISPNNHFSRL  YKSVLVRIYG  FLLCKKFNKV  YIANLDNPWI  RLLLSSLGKF  ELYTFDDGTA120
NIFKNSFFYK  NDSFRVNLIM  KLLFSRYTRQ  DLRKMSLVHY  TIYDNKENIV  DKDKLVYVSM180
REGIVKISPH  EVTSSKERVN  LLLGQPIDSI  FISVNDGVSV  VKKIIEVFNI  NYYYPHPRER240
FIIDGVNYIK  SKLIFEDYFV  SQFRLNVEYT  IYTFYSGAPL  SFINLPNVKI  ISIKPDICRN300
EIVQDFEIMK  SFGVEVIDYT  CQ322

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help