CAZyme3D

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Entry ID

Information for CAZyme ID: ATO63185.2

Basic Information

GenBank IDATO63185.2
FamilyGH178
Sequence Length356
UniProt IDA0A808C7P7(100,100)Download
Average pLDDT?94.32
CAZy50 ID87582
CAZy50 RepNo, ADP78098.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID439334
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium avium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHRSSLPAVP  GVLTPDQCRQ  TALSIAAAQE  PSGAIPWFDG  GHTDPWDHVE  CAMALTTAGL60
LEPARAAFDW  SRRTQRPDGS  WPIQFRAGVI  EDANSDSNFC  AYIAAGVWHH  VLVTGDDSFA120
AEMWPVVRKA  IDFVIDMQVG  YGEIAWARSE  AGLLPEALLT  GCSSVFHSIR  CALALAGLVD180
DPQPEWELAL  GRLGHAITAH  PEAFTEKDRY  SMDWYYPILG  TAVRGPAAAA  RIKQRWDDFV240
VDGLGIRCVG  DRPWVTGAET  CELVMALEAL  GRRSEAHRQF  AAMQHLREGD  GSYWTGLVFA300
DGKRWPEERT  TWTGAAMILA  ADALSDATAG  AGIFRGDALP  VGLQTDFDCE  CVASGR356

Predicted 3D structure by AlphaFold2 with pLDDT = 94.32 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MHRSSLPAVP  GVLTPDQCRQ  TALSIAAAQE  PSGAIPWFDG  GHTDPWDHVE  CAMALTTAGL60
LEPARAAFDW  SRRTQRPDGS  WPIQFRAGVI  EDANSDSNFC  AYIAAGVWHH  VLVTGDDSFA120
AEMWPVVRKA  IDFVIDMQVG  YGEIAWARSE  AGLLPEALLT  GCSSVFHSIR  CALALAGLVD180
DPQPEWELAL  GRLGHAITAH  PEAFTEKDRY  SMDWYYPILG  TAVRGPAAAA  RIKQRWDDFV240
VDGLGIRCVG  DRPWVTGAET  CELVMALEAL  GRRSEAHRQF  AAMQHLREGD  GSYWTGLVFA300
DGKRWPEERT  TWTGAAMILA  ADALSDATAG  AGIFRGDALP  VGLQTDFDCE  CVASGR356

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help