CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: ATH97466.1

Basic Information

GenBank IDATH97466.1
FamilyGH32
Sequence Length422
UniProt IDA0A2I1LIM6(96.9,100)Download
Average pLDDT?91.38
CAZy50 ID88491
CAZy50 RepYes, ATH97466.1
Structure ClusterSC_GH32_clus93
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1667168
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyDermabacteraceae
GenusDermabacter
SpeciesDermabacter jinjuensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTAQQASDPT  SFFPQRHRVH  ARGWINDPNG  IHKNGDTWHV  YFQWNPHSAR  HDRIHWGHVV60
SRDLVHWEER  PAALVPRKGE  ADSAGCWSGV  GLVDHGPGAA  EGGTPTLVYS  GVEETNPQFA120
SAIVARGNPD  ESLFDRFTVA  APAPDIEGLT  GIRDPFVLEA  EGHRFVIQGA  GMKREDGSHD180
AVLLAWLADD  LERWVYLGEV  ASSADPGLRD  MTRSTLWECP  QLVRVDGRWV  LIVGLWHGEN240
EAEGKPVLQG  SGYALGSLEV  QFDGDTPCGL  RFHDVTSQGL  VDQGPDFYAP  QAYVDGDRVL300
LWGWSWENAS  RTQEQTDAQG  WAGCLTLPRE  LHLNGNVLTS  HFPEEILAHA  QEAGVHEFGS360
DGCRISIVDP  SGNERDVARL  EGPGAVAVDR  SIIEVLPENG  TPKTLRVYGE  VRIHAHAAAR420
AS422

Predicted 3D structure by AlphaFold2 with pLDDT = 91.38 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTAQQASDPT  SFFPQRHRVH  ARGWINDPNG  IHKNGDTWHV  YFQWNPHSAR  HDRIHWGHVV60
SRDLVHWEER  PAALVPRKGE  ADSAGCWSGV  GLVDHGPGAA  EGGTPTLVYS  GVEETNPQFA120
SAIVARGNPD  ESLFDRFTVA  APAPDIEGLT  GIRDPFVLEA  EGHRFVIQGA  GMKREDGSHD180
AVLLAWLADD  LERWVYLGEV  ASSADPGLRD  MTRSTLWECP  QLVRVDGRWV  LIVGLWHGEN240
EAEGKPVLQG  SGYALGSLEV  QFDGDTPCGL  RFHDVTSQGL  VDQGPDFYAP  QAYVDGDRVL300
LWGWSWENAS  RTQEQTDAQG  WAGCLTLPRE  LHLNGNVLTS  HFPEEILAHA  QEAGVHEFGS360
DGCRISIVDP  SGNERDVARL  EGPGAVAVDR  SIIEVLPENG  TPKTLRVYGE  VRIHAHAAAR420
AS422

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(20-334)

MTAQQASEPT  SFFPQHHRVH  ARGWINDPNG  IHKNGDTWHV  YFQWNPHSAR  HDRIHWGHVV60
SRDLVHWEER  PAALVPREGE  ADSAGCWSGV  GLVDHGPGTA  EGGTPTLVYS  GVEKANPQFA120
SAIVARGNSD  ESLFDRFTVA  AAAPDIEGLT  GIRDPFVLEA  EGHRFVIQGA  GMKREDGSHD180
AVLLAWLADD  LERWVYLGEV  ASSADPGLRD  MTRSTLWECP  QLVCVDGHWV  LIVGLWHGEN240
EAEGKPVLQG  SGYALGSLEV  QFDGDTPCGL  RFHDVTSHGL  VDQGPDFYAP  QAYVDGDRVL300
LWGWSWENAS  RTQEQTDEQG  WAGCLTLPRE  LHLNGNVLTS  HFPEEILAHA  QEAGVHEFGS360
NGCRISIVDP  SGNERDVARL  EGPGAVAVDR  SIIEVLPENG  TPKTLRVYGE  VRIHAHAAAR420
AS422

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help