CAZyme3D

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Entry ID

Information for CAZyme ID: ATC86535.1

Basic Information

GenBank IDATC86535.1
FamilyPL29
Sequence Length527
UniProt IDA0A290S4E3(100,100)Download
Average pLDDT?87.34
CAZy50 ID63350
CAZy50 RepYes, ATC86535.1
Structure ClusterSC_PL29_clus5
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1117313
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas arctica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNEFYLKKS  IISTCSALII  CTSQLALAVT  NPHPLWTEFE  QGISHRLLDW  SNVGYKSGHA60
QIPNRSITHN  VIDYGAIVND  GKNDRLAVQK  AIDAASINGG  VVFFPRGTYD  FWVGPNGHSL120
ELSASNVVIR  GSGTRQTQLN  QHDFKEGKVH  FERFFLINAQ  SKSNIKGRTV  SLLADAKAHE180
KKIKVADTAN  IRVGDVIKLQ  MVSEQPGSDR  IAKKLISPLT  IEPEWTAGER  FIPFELMVTV240
KKISSNTIFL  EQPLTQSFLL  ADGARVSLIE  EELIQNVGIE  DLTLVGKLTN  FNHHGSFEDD300
YGWNAIQLKG  AKNSWIRNIK  TTKMGTDVNL  VNTGFSTVEN  IANDGRGHSA  LLASNSDFNL360
FKNSRFSGYR  QHFISFSGRS  AGNVFTSISN  NSQDSGAIDF  HGGGPSNYNL  IENSTNLRIA420
SAGAEKGMPH  AGQHNTLWNI  VAGKPTKIDD  MFSYGYFIYS  NYSGLYSGLD  LHRLHPKTTL480
VGITNGRNSI  TVAGSKKHRD  DEWLYVDSIG  KSVKPISIYT  AQRALGF527

Predicted 3D structure by AlphaFold2 with pLDDT = 87.34 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKNEFYLKKS  IISTCSALII  CTSQLALAVT  NPHPLWTEFE  QGISHRLLDW  SNVGYKSGHA60
QIPNRSITHN  VIDYGAIVND  GKNDRLAVQK  AIDAASINGG  VVFFPRGTYD  FWVGPNGHSL120
ELSASNVVIR  GSGTRQTQLN  QHDFKEGKVH  FERFFLINAQ  SKSNIKGRTV  SLLADAKAHE180
KKIKVADTAN  IRVGDVIKLQ  MVSEQPGSDR  IAKKLISPLT  IEPEWTAGER  FIPFELMVTV240
KKISSNTIFL  EQPLTQSFLL  ADGARVSLIE  EELIQNVGIE  DLTLVGKLTN  FNHHGSFEDD300
YGWNAIQLKG  AKNSWIRNIK  TTKMGTDVNL  VNTGFSTVEN  IANDGRGHSA  LLASNSDFNL360
FKNSRFSGYR  QHFISFSGRS  AGNVFTSISN  NSQDSGAIDF  HGGGPSNYNL  IENSTNLRIA420
SAGAEKGMPH  AGQHNTLWNI  VAGKPTKIDD  MFSYGYFIYS  NYSGLYSGLD  LHRLHPKTTL480
VGITNGRNSI  TVAGSKKHRD  DEWLYVDSIG  KSVKPISIYT  AQRALGF527

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL29(70-360)

MKNEFYLKKS  IISTCSALII  CTSQLALAVT  NPHPLWTEFE  QGISHRLLDW  SNVGYKSGHA60
QIPNRSITHN  VIDYGAIVND  GKNDRLAVQK  AIDAASINGG  VVFFPRGTYD  FWVGPNGHSL120
ELSASNVVIR  GSGTRQTQLN  QHDFKEGKVH  FERFFLINAQ  SKSNIKGRTV  SLLADAKAHE180
KKIKVADTAN  IRVGDVIKLQ  MVSEQPGSDR  IAKKLISPLT  IEPEWTAGER  FIPFELMVTV240
KKISSNTIFL  EQPLTQSFLL  ADGARVSLIE  EELIQNVGIE  DLTLVGKLTN  FNHHGSFEDD300
YGWNAIQLKG  AKNSWIRNIK  TTKMGTDVNL  VNTGFSTVEN  IANDGRGHSA  LLASNSDFNL360
FKNSRFSGYR  QHFISFSGRS  AGNVFTSISN  NSQDSGAIDF  HGGGPSNYNL  IENSTNLRIA420
SAGAEKGMPH  AGQHNTLWNI  VAGKPTKIDD  MFSYGYFIYS  NYSGLYSGLD  LHRLHPKTTL480
VGITNGRNSI  TVAGSKKHRD  DEWLYVDSIG  KSVKPISIYT  AQRALGF527

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help