Information for CAZyme ID: ATC63811.1
Basic Information
GenBank ID | ATC63811.1 |
Family | GH52 |
Sequence Length | 708 |
UniProt ID | A0A290QHI1(100,100)![]() |
Average pLDDT? | 95.25 |
CAZy50 ID | 37700 |
CAZy50 Rep | Yes, ATC63811.1 |
Structure Cluster | SC_GH52_clus2 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2576891 |
Kingdom | Bacteria |
Phylum | Verrucomicrobiota |
Class | Opitutae |
Order | Opitutales |
Family | Opitutaceae |
Genus | Nibricoccus |
Species | Nibricoccus aquaticus |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MPSAPSSAPL ESYHTQHSPF GAFASFTLGL VDSPGGFGHA LRGPAQQNLY IGFRPSTKSD | 60 |
WNLLPYFTPP KSNEVAFVGE LAVPQAPKNY RSLRPGDYDR QLGWASDTWR AGDDRFTFSL | 120 |
LTPFSRVPDP AKLTAADARL HLAPLVSGFI EYDNRQGKTP AELIFGLGEP DRGLHPLSDD | 180 |
ASPLAGFACG TEYAYATKPG RGIELRQGFD VFSPKFRDYR GLLVIGGETA LVFTVPAGQK | 240 |
KRFPLVLAFY NAGQITTGLP ASYAYTRHFS GLPDVLAHGL KNHARYAKIA RDRDAELTRS | 300 |
RLNVDQQFLL AQSTHSYFGN TQLLWHRGKP LWVVNEGEYR MMNTFDLTVD HVFFELEWLP | 360 |
WAVRDTLDLF VRRYGYTDRI RTADRLAPGG LAFTHDMGVM NHFTPPGRSS YECDDVEGCF | 420 |
SHMTMEQLLN WILTAVTYAE KTGDRPWLVR KKKILLACAE SLRRRDHPDP KKRDGILKHD | 480 |
SSRTGTHGWE ITTYDSLDVS LGQARNNLYL AVKTLGAWVL LENAFARLGL KKESTSARAT | 540 |
SDLLARSITQ KFDPATGFFP AVFEKGNQSR IIPLIEGLVY PLYLGYRDAI DPAGRFAPLF | 600 |
DQFRQHLAQV FKRGICLDET SGGWKMSSTS RNTWFSKIAI SQHVIRQLFP ETLSPEALAA | 660 |
DRVHADWQRR PGCGAFAMCD QILSDTGVVC GSRYYPRGVT AWLWLLEK | 708 |
Predicted 3D structure by AlphaFold2 with pLDDT = 95.25 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MPSAPSSAPL ESYHTQHSPF GAFASFTLGL VDSPGGFGHA LRGPAQQNLY IGFRPSTKSD | 60 |
WNLLPYFTPP KSNEVAFVGE LAVPQAPKNY RSLRPGDYDR QLGWASDTWR AGDDRFTFSL | 120 |
LTPFSRVPDP AKLTAADARL HLAPLVSGFI EYDNRQGKTP AELIFGLGEP DRGLHPLSDD | 180 |
ASPLAGFACG TEYAYATKPG RGIELRQGFD VFSPKFRDYR GLLVIGGETA LVFTVPAGQK | 240 |
KRFPLVLAFY NAGQITTGLP ASYAYTRHFS GLPDVLAHGL KNHARYAKIA RDRDAELTRS | 300 |
RLNVDQQFLL AQSTHSYFGN TQLLWHRGKP LWVVNEGEYR MMNTFDLTVD HVFFELEWLP | 360 |
WAVRDTLDLF VRRYGYTDRI RTADRLAPGG LAFTHDMGVM NHFTPPGRSS YECDDVEGCF | 420 |
SHMTMEQLLN WILTAVTYAE KTGDRPWLVR KKKILLACAE SLRRRDHPDP KKRDGILKHD | 480 |
SSRTGTHGWE ITTYDSLDVS LGQARNNLYL AVKTLGAWVL LENAFARLGL KKESTSARAT | 540 |
SDLLARSITQ KFDPATGFFP AVFEKGNQSR IIPLIEGLVY PLYLGYRDAI DPAGRFAPLF | 600 |
DQFRQHLAQV FKRGICLDET SGGWKMSSTS RNTWFSKIAI SQHVIRQLFP ETLSPEALAA | 660 |
DRVHADWQRR PGCGAFAMCD QILSDTGVVC GSRYYPRGVT AWLWLLEK | 708 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.