CAZyme3D

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Entry ID

Information for CAZyme ID: ATC61807.1

Basic Information

GenBank IDATC61807.1
FamilyGH8
Sequence Length369
UniProt IDA0A5R9CKU3(99.7,100)Download
Average pLDDT?96.07
CAZy50 ID120083
CAZy50 RepYes, ATC61807.1
Structure ClusterSC_GH8_clus30
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1366
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyStreptococcaceae
GenusLactococcus
SpeciesLactococcus raffinolactis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSIHRLVKYL  FTVLILVSYI  GLVLFSISSN  KEALQKNSYW  DWYRNYVSQS  SKGTFVNTGT60
QEDPVALSES  QGYGMLITLL  AAQKGYTKED  QFMRLFHYYK  ANRISEQNTL  MKWQQKKSSN120
GWSSVDQNNA  TDGDLDIAYA  LIQADKLWPD  SFEQYGLAAQ  QLLASIKAHN  YSEKTGLLTV180
GNWATVDSKA  ETMIRTSDMI  PHYFETFAAY  TKDPFWTKLE  AHTTKALTQM  SQQTSTGLLP240
DFAWVTASSI  TPLKPNEIAG  KNDGDYAYNA  ARVPLRLADS  DKPEVKKTLD  KMLMFFEKQP300
VIYGGYTLKG  KPLVKNQSNS  FSAPILYATK  GDKNFSNLYA  SQRWIFNYAI  VGKDYYGDTL360
KVLVLLKLY369

Predicted 3D structure by AlphaFold2 with pLDDT = 96.07 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSIHRLVKYL  FTVLILVSYI  GLVLFSISSN  KEALQKNSYW  DWYRNYVSQS  SKGTFVNTGT60
QEDPVALSES  QGYGMLITLL  AAQKGYTKED  QFMRLFHYYK  ANRISEQNTL  MKWQQKKSSN120
GWSSVDQNNA  TDGDLDIAYA  LIQADKLWPD  SFEQYGLAAQ  QLLASIKAHN  YSEKTGLLTV180
GNWATVDSKA  ETMIRTSDMI  PHYFETFAAY  TKDPFWTKLE  AHTTKALTQM  SQQTSTGLLP240
DFAWVTASSI  TPLKPNEIAG  KNDGDYAYNA  ARVPLRLADS  DKPEVKKTLD  KMLMFFEKQP300
VIYGGYTLKG  KPLVKNQSNS  FSAPILYATK  GDKNFSNLYA  SQRWIFNYAI  VGKDYYGDTL360
KVLVLLKLY369

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(38-366)

MSIHRLVKYL  FTVLILVSYI  GLVLFSISSN  KEALQKNSYW  DWYRNYVSQS  SKGTFVNTGT60
QEDPVALSES  QGYGMLITLL  AAQKGYTKED  QFMRLFHYYK  ANRISEQNTL  MKWQQKKSPN120
GWSSVDQNNA  TDGDLDIAYA  LIQADKLWPD  SFEQYGLAAQ  QLLASIKAHN  YSEKTGLLTV180
GNWATVDSKA  ETMIRTSDMI  PHYFETFAAY  TKDPFWTKLE  AHTTKALTQM  SQQTSTGLLP240
DFAWVTASSI  TPLKPNEIAG  KNDGDYAYNA  ARVPLRLADS  DKPEVKKTLD  KMLMFFEKQP300
VIYGGYTLKG  KPLVKNQSNS  FSAPILYATK  GDKNFSNLYA  SQRWIFNYAI  VGKDYYGDTL360
KVLVLLKLY369

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help