CAZyme3D

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Entry ID

Information for CAZyme ID: ASY34215.1

Basic Information

GenBank IDASY34215.1
FamilyCBM35
Sequence Length339
UniProt IDA0A249LZB0(100,100)Download
Average pLDDT?65.23
CAZy50 ID137453
CAZy50 RepYes, ASY34215.1
Structure ClusterSC_CBM35_clus34
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1984801
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. CLI2509

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTPGPPGNNG  ANPPEGENPG  AAGTEEDDPF  GYLYADGQSA  GARPPGGGGY  GYPGPRSYHQ60
VRAVGERQYG  YGYPPKEGQQ  SAPQQGAPTA  AYPQQQNAHY  AAPENLPGGP  PAGGGRRAAG120
GQGGGRGRGP  NNKGLLIGAV  AVVCAVAVGI  TVAVVTGGSG  DDKQAAKDPA  PSATASQGQG180
GEDDGKQSGD  DASKEPQEEL  PKADAKTLQL  SGGPSVASDV  EGAKADGGSY  VAGFNKPGAK240
LTWNVSVPKG  GEYTVFLDYG  VPGKDQQASL  YVNGGDRRDL  SLKNWAQAPE  GDWKKGWTTS300
YVFTNLTKGT  NAISFSCDEG  DTCDANFDRV  WLKAGHVTK339

Predicted 3D structure by AlphaFold2 with pLDDT = 65.23 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTPGPPGNNG  ANPPEGENPG  AAGTEEDDPF  GYLYADGQSA  GARPPGGGGY  GYPGPRSYHQ60
VRAVGERQYG  YGYPPKEGQQ  SAPQQGAPTA  AYPQQQNAHY  AAPENLPGGP  PAGGGRRAAG120
GQGGGRGRGP  NNKGLLIGAV  AVVCAVAVGI  TVAVVTGGSG  DDKQAAKDPA  PSATASQGQG180
GEDDGKQSGD  DASKEPQEEL  PKADAKTLQL  SGGPSVASDV  EGAKADGGSY  VAGFNKPGAK240
LTWNVSVPKG  GEYTVFLDYG  VPGKDQQASL  YVNGGDRRDL  SLKNWAQAPE  GDWKKGWTTS300
YVFTNLTKGT  NAISFSCDEG  DTCDANFDRV  WLKAGHVTK339

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM35(219-322)

MTPGPPGNNG  ANPPEGENPG  AAGTEEDDPF  GYLYADGQSA  GARPPGGGGY  GYPGPRSYHQ60
VRAVGERQYG  YGYPPKEGQQ  SAPQQGAPTA  AYPQQQNAHY  AAPENLPGGP  PAGGGRRAAG120
GQGGGRGRGP  NNKGLLIGAV  AVVCAVAVGI  TVAVVTGGSG  DDKQAAKDPA  PSATASQGQG180
GEDDGKQSGD  DASKEPQEEL  PKADAKTLQL  SGGPSVASDV  EGAKADGGSY  VAGFNKPGAK240
LTWNVSVPKG  GEYTVFLDYG  VPGKDQQASL  YVNGGDRRDL  SLKNWAQAPE  GDWKKGWTTS300
YVFTNLTKGT  NAISFSCDEG  DTCDANFDRV  WLKAGHVTK339

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help