CAZyme3D

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Entry ID

Information for CAZyme ID: ASD82285.1

Basic Information

GenBank IDASD82285.1
FamilyGT112
Sequence Length511
UniProt IDA0A808W392(100,100)Download
Average pLDDT?81.67
CAZy50 ID66605
CAZy50 RepYes, ASD82285.1
Structure ClusterSC_GT112_clus2
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID32009
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia gladioli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSTDALEVRR  RTASIIEAAM  SAVSASAAGA  PPRAVAAGSV  GSLPAGAQDL  PAVPTLAARA60
TPAVIGDPRM  PVVAVPVGPA  AAPVEARGPA  GTADAPPEPV  FEGGPAAIVD  PGAPVLEGPH120
GIRYDFNYGC  RVQVPAGPWR  VRLLDLDADV  VLFDELVDDG  VVSSTKKYFV  RFRIEVLRDE180
ELVFEHDYDA  CGQRVYMRLP  VGTLGDILAW  FPYVDEFRRV  HDCRVSVSMG  EALWSLFEDA240
YPELDYVRPD  EEPKALAGAY  ASYYLGIFFP  CDDRTHQPTD  FRVSGLQKTI  PYLLGLMAVE300
RRPRIAVRDT  TRLIAEPYVV  IAAQSSSQCK  YWNHPTGWYE  LVKFLKASGY  RVLCIDKQPA360
HGEKLMWNLI  PYGSEDFTGD  LPLQQRASLL  LHADFFIGLS  SGLSWLAWAL  GKPVVMISGF420
THPLNEFETP  WRVINYHVCN  SCWNDTSVEF  DHRDFAWCPR  HAGTDRQFEC  SRLITPGQVI480
RTVKSLMTNL  DLDPRRVVEP  QDAAAKQGGR  R511

Predicted 3D structure by AlphaFold2 with pLDDT = 81.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSTDALEVRR  RTASIIEAAM  SAVSASAAGA  PPRAVAAGSV  GSLPAGAQDL  PAVPTLAARA60
TPAVIGDPRM  PVVAVPVGPA  AAPVEARGPA  GTADAPPEPV  FEGGPAAIVD  PGAPVLEGPH120
GIRYDFNYGC  RVQVPAGPWR  VRLLDLDADV  VLFDELVDDG  VVSSTKKYFV  RFRIEVLRDE180
ELVFEHDYDA  CGQRVYMRLP  VGTLGDILAW  FPYVDEFRRV  HDCRVSVSMG  EALWSLFEDA240
YPELDYVRPD  EEPKALAGAY  ASYYLGIFFP  CDDRTHQPTD  FRVSGLQKTI  PYLLGLMAVE300
RRPRIAVRDT  TRLIAEPYVV  IAAQSSSQCK  YWNHPTGWYE  LVKFLKASGY  RVLCIDKQPA360
HGEKLMWNLI  PYGSEDFTGD  LPLQQRASLL  LHADFFIGLS  SGLSWLAWAL  GKPVVMISGF420
THPLNEFETP  WRVINYHVCN  SCWNDTSVEF  DHRDFAWCPR  HAGTDRQFEC  SRLITPGQVI480
RTVKSLMTNL  DLDPRRVVEP  QDAAAKQGGR  R511

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT112(114-484)

MSTDALEVRR  RTASIIEAAM  SAVSASAAGA  PPRAVAAGSV  GSLPAGAQDL  PAVPTLAARA60
TPAVIGDPRM  PVVAVPVGPA  AAPVEARGPA  GTADAPPEPV  FEGGPAAIVD  PGAPVLEGPH120
GIRYDFNYGC  RVQVPAGPWR  VRLLDLDADV  VLFDELVDDG  VVSSTKKYFV  RFRIEVLRDE180
ELVFEHDYDA  CGQRVYMRLP  VGTLGDILAW  FPYVDEFRRV  HDCRVSVSMG  EALWSLFEDA240
YPELDYVRPD  EEPKALAGAY  ASYYLGIFFP  CDDRTHQPTD  FRVSGLQKTI  PYLLGLMAVE300
RRPRIAVRDT  TRLIAEPYVV  IAAQSSSQCK  YWNHPTGWYE  LVKFLKASGY  RVLCIDKQPA360
HGEKLMWNLI  PYGSEDFTGD  LPLQQRASLL  LHADFFIGLS  SGLSWLAWAL  GKPVVMISGF420
THPLNEFETP  WRVINYHVCN  SCWNDTSVEF  DHRDFAWCPR  HAGTDRQFEC  SRLITPGQVI480
RTVKSLMTNL  DLDPRRVVEP  QDAAAKQGGR  R511

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help