CAZyme3D

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Entry ID

Information for CAZyme ID: ASA69242.1

Basic Information

GenBank IDASA69242.1
FamilyGH1
Sequence Length563
UniProt IDA0A1Z2THK9(100,100)Download
Average pLDDT?87.69
CAZy50 ID57558
CAZy50 RepYes, ASA69242.1
Structure ClusterSC_GH1_clus228
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID36987
KingdomEukaryota
PhylumArthropoda
ClassInsecta
OrderBlattodea
FamilyRhinotermitidae
GenusCoptotermes
SpeciesCoptotermes formosanus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLSGAGAWRC  FLLSVLLLNL  SATASGRLIS  NILNPILSSL  GLNSQSTKNT  VAPSQYNVVT60
TPKNTVAPSQ  SNTDPTKKNF  TFPEDFYFAA  ATAAYQAEGG  WNADGKGPNI  WDTLTHNHPD120
YISDFSNGDV  AADSYHKYTE  DIKLLKDIGV  QFYRFSISWS  RILPKGSVAA  INQAGVDYYN180
NIINGLLAVG  IQPMVTMYHW  DLPQPLQDIG  GWANDSIADF  FKDYARLLYR  FFGDRVKWWI240
PINEPFMIAN  GYSECRGKAP  SLCQPGTADY  LAARTMLLAH  AKAYHVYHND  FRDTQAGKVS300
TSFSIDWHEP  RTNSTADILA  AERAVQFELG  MFAHPIYSTS  GDYPPEVRAR  VDNNSRAEGY360
NTSRLPKFTQ  EEIDYIKGTW  DFFALNHYTT  YWAQDGLQGP  DPSRQRDSGV  MKSQDPSCPE420
TSSPWFRVVP  WGFRKILRWV  KKEYNNPPIF  ITESGYSDDG  RLQDTGRIKY  YVDYIRELLK480
AKYEDGCQII  GYTAWSLIDN  FQWEEGYESK  FGLVYVNFSD  PARTRIIKQS  ARLYSEIIRT540
RKVPDRYPQY  SYDTQECHPT  IPL563

Predicted 3D structure by AlphaFold2 with pLDDT = 87.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLSGAGAWRC  FLLSVLLLNL  SATASGRLIS  NILNPILSSL  GLNSQSTKNT  VAPSQYNVVT60
TPKNTVAPSQ  SNTDPTKKNF  TFPEDFYFAA  ATAAYQAEGG  WNADGKGPNI  WDTLTHNHPD120
YISDFSNGDV  AADSYHKYTE  DIKLLKDIGV  QFYRFSISWS  RILPKGSVAA  INQAGVDYYN180
NIINGLLAVG  IQPMVTMYHW  DLPQPLQDIG  GWANDSIADF  FKDYARLLYR  FFGDRVKWWI240
PINEPFMIAN  GYSECRGKAP  SLCQPGTADY  LAARTMLLAH  AKAYHVYHND  FRDTQAGKVS300
TSFSIDWHEP  RTNSTADILA  AERAVQFELG  MFAHPIYSTS  GDYPPEVRAR  VDNNSRAEGY360
NTSRLPKFTQ  EEIDYIKGTW  DFFALNHYTT  YWAQDGLQGP  DPSRQRDSGV  MKSQDPSCPE420
TSSPWFRVVP  WGFRKILRWV  KKEYNNPPIF  ITESGYSDDG  RLQDTGRIKY  YVDYIRELLK480
AKYEDGCQII  GYTAWSLIDN  FQWEEGYESK  FGLVYVNFSD  PARTRIIKQS  ARLYSEIIRT540
RKVPDRYPQY  SYDTQECHPT  IPL563

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH1(80-542)

MLSGAGAWRC  FLLSVLLLNL  SATASGRLIS  NILNPILSSL  GLNSQSTKNT  VAPSQYNVVT60
TPKNTVAPSQ  SNTDPTKKNF  TFPEDFYFAA  ATAAYQAEGG  WNADGKGPNI  WDTLTHNHPD120
YISDFSNGDV  AADSYHKYTE  DIKLLKDIGV  QFYRFSISWS  RILPKGSVAA  INQAGVDYYN180
NIINGLLAVG  IQPMVTMYHW  DLPQPLQDIG  GWANDSIADF  FKDYARLLYR  FFGDRVKWWI240
PINEPFMIAN  GYSECRGKAP  SLCQPGTADY  LAARTMLLAH  AKAYHVYHND  FRDTQAGKVS300
TSFSIDWHEP  RTNSTADILA  AERAVQFELG  MFAHPIYSTS  GDYPPEVRAR  VDNNSRAEGY360
NTSRLPKFTQ  EEIDYIKGTW  DFFALNHYTT  YWAQDGLQGP  DPSRQRDSGV  MKSQDPSCPE420
TSSPWFRVVP  WGFRKILRWV  KKEYNNPPIF  ITESGYSDDG  RLQDTGRIKY  YVDYIRELLK480
AKYEDGCQII  GYTAWSLIDN  FQWEEGYESK  FGLVYVNFSD  PARTRIIKQS  ARLYSEIIRT540
RKVPDRYPQY  SYDTQECHPT  IPL563

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help