CAZyme3D

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Entry ID

Information for CAZyme ID: ASA20023.1

Basic Information

GenBank IDASA20023.1
FamilyGH5_25
Sequence Length397
UniProt IDA0A2Z2KB04(100,100)Download
Average pLDDT?88.44
CAZy50 ID100542
CAZy50 RepYes, ASA20023.1
Structure ClusterSC_GH5_clus115
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID414771
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus donghaensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKFFRMKLLQ  TAFLAILLGL  VLPGCSGTGN  DSGSGNKIND  KGGENMEAEA  KEDVYEQARA60
LGRGVNLGNA  LDAPFEGEWD  MVIQEEYFGL  IREKGFQSVR  VPIRYSNKTQ  AEAPYTIDEA120
FMERVDWVVE  QSLEEGLKVI  VDLHHFDEML  SDPAGNKDRL  LAIWDQVSHR  YSDQPKQVYY180
EVLNEPNTAI  TPVLWNEYLI  EAIAVIRSND  PGRTLIVGGG  EWNSIDGLYK  LELPEDDRNI240
IATFHYYSPI  LVTHQGAEWM  TAEYGTTGLT  WPGPPAEPVA  PVTAAQEVDW  VSGFFNDYNT300
KPAADNPAGM  AALIRDLERA  AQWGKDHDRP  LFLGEFGVYS  TADTVSRIAW  TKAVRSEAER360
LDMSWSYWEF  GASFGLYDRT  AGLWREELVE  ALLPGGE397

Predicted 3D structure by AlphaFold2 with pLDDT = 88.44 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKFFRMKLLQ  TAFLAILLGL  VLPGCSGTGN  DSGSGNKIND  KGGENMEAEA  KEDVYEQARA60
LGRGVNLGNA  LDAPFEGEWD  MVIQEEYFGL  IREKGFQSVR  VPIRYSNKTQ  AEAPYTIDEA120
FMERVDWVVE  QSLEEGLKVI  VDLHHFDEML  SDPAGNKDRL  LAIWDQVSHR  YSDQPKQVYY180
EVLNEPNTAI  TPVLWNEYLI  EAIAVIRSND  PGRTLIVGGG  EWNSIDGLYK  LELPEDDRNI240
IATFHYYSPI  LVTHQGAEWM  TAEYGTTGLT  WPGPPAEPVA  PVTAAQEVDW  VSGFFNDYNT300
KPAADNPAGM  AALIRDLERA  AQWGKDHDRP  LFLGEFGVYS  TADTVSRIAW  TKAVRSEAER360
LDMSWSYWEF  GASFGLYDRT  AGLWREELVE  ALLPGGE397

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_25(77-370)

MKFFRMKLLQ  TAFLAILLGL  VLPGCSGTGN  DSGSGNKIND  KGGENMEAEA  KEDVYEQARA60
LGRGVNLGNA  LDAPFEGEWD  MVIQEEYFGL  IREKGFQSVR  VPIRYSNKTQ  AEAPYTIDEA120
FMERVDWVVE  QSLEEGLKVI  VDLHHFDEML  SDPAGNKDRL  LAIWDQVSHR  YSDQPKQVYY180
EVLNEPNTAI  TPVLWNEYLI  EAIAVIRSND  PGRTLIVGGG  EWNSIDGLYK  LELPEDDRNI240
IATFHYYSPI  LVTHQGAEWM  TAEYGTTGLT  WPGPPAEPVA  PVTAAQEVDW  VSGFFNDYNT300
KPAADNPAGM  AALIRDLERA  AQWGKDHDRP  LFLGEFGVYS  TADTVSRIAW  TKAVRSEAER360
LDMSWSYWEF  GASFGLYDRT  AGLWREELVE  ALLPGGE397

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help