CAZyme3D

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Entry ID

Information for CAZyme ID: ARW18637.1

Basic Information

GenBank IDARW18637.1
FamilyGH32
Sequence Length1083
UniProt IDA0A1Y0VVU0(100,100)Download
Average pLDDT?74.56
CAZy50 ID3105
CAZy50 RepNo, UYX04050.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1255
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusPediococcus
SpeciesPediococcus pentosaceus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYKSKGMWVF  ACLSTCLIVS  FFNDGQNVSA  ATSASSSQIS  QSNTQTSDVT  TDESVTQSLS60
VNDVPTVASS  KQVDLPSSSD  SEASSSNTAS  NTASNAASNT  ASNAASNTAS  NAASQTDDNK120
NQVASNSTNN  TDVTKPVTTS  DSDKAIVNSN  TTLPTSDEQA  KSSVGQSQTD  QSTSSTTIAT180
KAITTIAIDN  SAKATTPNIS  QNDQYDEQYR  NQFHYSSNKN  WINDPNGLFY  DSSTGLYNLY240
YQYNPKGNQW  GNMSWGHAVS  KDLINWTQED  VAIPWLENQG  WEDFTYTNTT  GKLKDYGTVR300
YIGDPTGDWG  TTPHSKAIFS  GSIVVDANNV  SGLGKGAILA  FYTADYEIAA  RKNDDAEGGL360
GTWIGVNEIQ  EQHLAYSLDG  GKTFIQYSKD  GNAANPQAII  PTSMNQGGDA  ANFRDPSVIY420
DAVNKQYYLT  VVSGQQALIY  KSSNLLDWTY  ASKIERENDV  GNGVWECPSL  IPIKVAGTND480
TKWVFCVSVQ  QGAHATGSGM  QYYVGNMTAD  GTWMPESSKT  LQDPMTMDSG  EDFYAGIPFS540
NMPDGRTVML  AWQSNWSYTG  EAKTTPWYGN  MTLPRELNLE  KSPDTTDGYL  LANTVVKEIA600
NNEEANVIDQ  KDSNFSISSN  DQKVQYDGKQ  YKISATFSWD  ESNKPSSVGF  KLRVSDDKKY660
DMLVGYDLTT  GLFFVQRLST  GEPNMGAPRD  KMNATVNADG  SITITVYVDE  TSIEAFANNG720
EKSITQNFFM  RPENIGDQAT  NGVYVYSDNG  TTNISNLTIN  PIASIWNSVG  KLTEKFVDES780
DNSIAADVVS  SGNIGDPYST  TQKDIAGYTF  KEVQGSPKGS  FTAQDQTVTY  VYTKNPVAGG840
NVTAKYVDES  GNSIATDVVS  SGNISDPYST  TQKDIAGYTF  KEVQGSPKGS  FTAQDQTVTY900
VYTKNPVAGG  KTTAKYVDES  GNSIATDVVS  SGNISDPYST  TQKDIAGYTF  KEVQGTPTGN960
FTAQDQTVTY  VYTKNPVAGG  KVTGDTGSIQ  SKNPSVTGNG  SEKPSSDQLG  NSSQLNNSAK1020
SGIVNTSTSA  GSQSNNDFNS  ISRLPKTGED  KNEKETISFV  GVLLVIVGNL  LGLIGIKKHR1080
SSL1083

Predicted 3D structure by AlphaFold2 with pLDDT = 74.56 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(214-582)

MYKSKGMWVF  ACLSTCLIVS  FFNDGQNVSA  ATSASSSQIS  QSNTQTSDVT  TDESVTQSLS60
VNDVPTVASS  KQVDLPSSSD  SEASSSNTAS  NTASNAASNT  ASNAASNTAS  NAASQTDDNK120
NQVASNSTNN  TDVTKPVTTS  DSDKAIVNSN  TTLPTSDEQA  KSSVGQSQTD  QSTSSTTIAT180
KAITTIAIDN  SAKATTPNIS  QNDQYDEQYR  NQFHYSSNKN  WINDPNGLFY  DSSTGLYNLY240
YQYNPKGNQW  GNMSWGHAVS  KDLINWTQED  VAIPWLENQG  WEDFTYTNTT  GKLKDYGTVR300
YIGDPTGDWG  TTPHSKAIFS  GSIVVDANNV  SGLGKGAILA  FYTADYEIAA  RKNDDAEGGL360
GTWIGVNEIQ  EQHLAYSLDG  GKTFIQYSKD  GNAANPQAII  PTSMNQGGDA  ANFRDPSVIY420
DAVNKQYYLT  VVSGQQALIY  KSSNLLDWTY  ASKIERENDV  GNGVWECPSL  IPIKVAGTND480
TKWVFCVSVQ  QGAHATGSGM  QYYVGNMTAD  GTWMPESSKT  LQDPMTMDSG  EDFYAGIPFS540
NMPDGRTVML  AWQSNWSYTG  EAKTTPWYGN  MTLPRELNLE  KSPDTTDGYL  LANTVVKEIA600
NNEEANVIDQ  KDSNFSISSN  DQKVQYDGKQ  YKISATFSWD  ESNKPSSVGF  KLRVSDDKKY660
DMLVGYDLTT  GLFFVQRLST  GEPNMGAPRD  KMNATVNADG  SITITVYVDE  TSIEAFANNG720
EKSITQNFFM  RPENIGDQAT  NGVYVYSDNG  TTNISNLTIN  PIASIWNSVG  KLTEKFVDES780
DNSIAADVVS  SGNIGDPYST  TQKDIAGYTF  KEVQGSPKGS  FTAQDQTVTY  VYTKNPVAGG840
NVTAKYVDES  GNSIATDVVS  SGNISDPYST  TQKDIAGYTF  KEVQGSPKGS  FTAQDQTVTY900
VYTKNPVAGG  KTTAKYVDES  GNSIATDVVS  SGNISDPYST  TQKDIAGYTF  KEVQGTPTGN960
FTAQDQTVTY  VYTKNPVAGG  KVTGDTGSIQ  SKNPSVTGNG  SEKPSSDQLG  NSSQLNNSAK1020
SGIVNTSTSA  GSQSNNDFNS  ISRLPKTGED  KNEKETISFV  GVLLVIVGNL  LGLIGIKKHR1080
SSL1083

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help