CAZyme3D

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Entry ID

Information for CAZyme ID: ARV27415.1

Basic Information

GenBank IDARV27415.1
FamilyGH2
Sequence Length415
UniProt IDF7YKI2(99.8,98.1)Download
Average pLDDT?93.91
CAZy50 ID91562
CAZy50 RepYes, ARV27415.1
Structure ClusterSC_GH2_clus95
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID55601
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio anguillarum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFDLNGEWRL  SSPEYPDIQI  AMTLPGDQYH  ALLQAGLIPH  PYYASNESQV  QWAGLCHWVL60
TKAITLNAAD  LQYPNHLLEL  NKVDTFADLW  INGQKVLQCH  NAFQTYTVNI  RPYLQIGVNH120
FEWRFEPAAS  VAKQRADELP  FPIPWAQGNN  QLPHMNTVRK  PQCHSGWDWG  ICLAVCGIFA180
PMQLKTVQEY  SLLGVDIEQV  WHALTHVTLH  VRIRHSESLS  TPITLTFGDQ  TITIDSEAFC240
NQSSVDIDVH  HPHLWWPNGY  GDPYLYTLSI  AMAQQQINRQ  VGLRRLTLRT  EQDSIGSEMT300
FIVNEVSISV  KGANWIPMDA  MPSKVNFSRY  QQLLRAAQEA  HMNMIRVWGG  GDYEHDHFYQ360
LCDQLGLLVW  QDLMFSCAQY  PSTPSFLEEV  KQEVTQQIQR  LKHHAALPFG  VVIMR415

Predicted 3D structure by AlphaFold2 with pLDDT = 93.91 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MFDLNGEWRL  SSPEYPDIQI  AMTLPGDQYH  ALLQAGLIPH  PYYASNESQV  QWAGLCHWVL60
TKAITLNAAD  LQYPNHLLEL  NKVDTFADLW  INGQKVLQCH  NAFQTYTVNI  RPYLQIGVNH120
FEWRFEPAAS  VAKQRADELP  FPIPWAQGNN  QLPHMNTVRK  PQCHSGWDWG  ICLAVCGIFA180
PMQLKTVQEY  SLLGVDIEQV  WHALTHVTLH  VRIRHSESLS  TPITLTFGDQ  TITIDSEAFC240
NQSSVDIDVH  HPHLWWPNGY  GDPYLYTLSI  AMAQQQINRQ  VGLRRLTLRT  EQDSIGSEMT300
FIVNEVSISV  KGANWIPMDA  MPSKVNFSRY  QQLLRAAQEA  HMNMIRVWGG  GDYEHDHFYQ360
LCDQLGLLVW  QDLMFSCAQY  PSTPSFLEEV  KQEVTQQIQR  LKHHAALPFG  VVIMR415

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(3-406)

MFDLNGEWRL  SSPEYPDIQI  AMTLPGDQYH  ALLQAGLIPH  PYYASNESQV  QWAGLCHWVL60
TKAITLNAAD  LQYPNHLLEL  NKVDTFADLW  INGQKVLQCH  NAFQTYTVNI  RPYLQIGVNH120
FEWRFEPAAS  VAKQRADELP  FPIPWAQGNN  QLPHMNTVRK  PQCHSGWDWG  ICLAVCGIFA180
PMQLKTVQEY  SLLGVDIEQV  WHALTHVTLH  VRIRHSESLS  TPITLTFGDQ  TITIDSEAFC240
NQSSVDIDVH  HPHLWWPNGY  GDPYLYTLSI  AMAQQQINRQ  VGLRRLTLRT  EQDSIGSEMT300
FIVNEVSISV  KGANWIPMDA  MPSKVNFSRY  QQLLRAAQEA  HMNMIRVWGG  GDYEHDHFYQ360
LCDQLGLLVW  QDLMFSCAQY  PSTPSFLEEV  KQEVTQQIQR  LKHHACLAIW  CGDNEVIGSL420
TWYPESRENR  EKYLVNYDRL  NRFLEILVNE  QDPSRRFWAS  SPCNGELDFG  DAWHDDNKGD480
MHFWDVWHSG  KSFDAYHSIS  PRFCSEFGYQ  SWPSFSEVKQ  IIPESDWNIS  APHFEHHQKN540
ARGNSIITEM  FTRYFRFPNG  FQQMLYLSQV  QQAMAIKTAA  EAWRATSPIC  RGILYWQLND600
NWPVASWSSI  EYSGRWKQLH  YHAKRFYNPL  LACFSEDEKH  LSLRAINDAP  GEQYLVGDIY660
WFGWEGELRK  HWSINERLPQ  ESNQIVWQHT  IKDFTPEKGA  IYFVSTDGQR  DNFWLPDVPK720
RLPLKSARIL  CEYRAGSLCL  TTDRPALYVH  LEHDNVLQFS  DSSFFLLPNQ  MRTIAFRSDD780
KSHLNCTIYQ  LAE793

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help