Information for CAZyme ID: ARU26837.1
Basic Information
| GenBank ID | ARU26837.1 |
| Family | CBM32, GH18 |
| Sequence Length | 732 |
| UniProt ID | A0A1Y0FTW0(100,100) |
| Average pLDDT? | 87.45 |
| CAZy50 ID | 34824 |
| CAZy50 Rep | Yes, ARU26837.1 |
| Structure Cluster | SC_CBM32_clus40, SC_GH18_clus16 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1987723 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Cellvibrio |
| Species | Cellvibrio sp. PSBB006 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MTLIKYLRQN LWRGQVRLTP FAFLVCLAGM LCSVSLSAQT AIKLSDGAAT FASSQFQSAS | 60 |
| FAVDGDSATR WESTHAVDPA FLTIDLGQAY NLSQVVIDWE AANAANYTIQ GSNNNSSWIT | 120 |
| LATRTGGSFG DRTDTVNVSG SYRYVRMNGT TRSVGNDWGY SIWEMAVYGS SNSNLPTPWN | 180 |
| NGDVGSPLPG SASFSNGVFN TTANGNDIWN NTDNFHFIYQ PFNGDGAIIA QVTSLSATHE | 240 |
| WAKAGVMLRE NLTGGSKNAM MAMTSSNGAI FQRRTAANGT SVSNSQGGVF TPYWVKLTRN | 300 |
| GNTLTGFSSF DGNTWTQVGT TTVSMNSNAY VGLAHTSHAA GTLGNAQFDQ VTVQAGAVCF | 360 |
| YENTNFGGAS FCRGAGAQNV PSGWGNRVSS VRVINGYSAV LRSQANQGGS SVTLTGDTAN | 420 |
| LANVGFDNLL ASYTISNQGS TDNMKVVGYM PSWSGSATAI QYDKLTHINY SFVLPNANGS | 480 |
| LQGVPSPSKL QSIVTLGHAN GVKVLIAVGG WNDGNDSAFE SLAANASTRT AFVNNLINLV | 540 |
| EQYNLDGVDM DWEYPDPGAS ADNYALLMGQ LSNALHARGK LLTAAVVASG YTGGGVKAEV | 600 |
| FNYIDFLNLM AYDGGNGSTH SPYSYAVSSL NYWLSRGLPK EKAVLGVPYY ARPSWAAYNT | 660 |
| LVGSNSANAC RDSNGSDYWN GIPTIRQKAQ LARSQAGGIM TWELSQDTNS ANSLLTAMYE | 720 |
| AVNGLGGSYN CN | 732 |
Predicted 3D structure by AlphaFold2 with pLDDT = 87.45 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MTLIKYLRQN LWRGQVRLTP FAFLVCLAGM LCSVSLSAQT AIKLSDGAAT FASSQFQSAS | 60 |
| FAVDGDSATR WESTHAVDPA FLTIDLGQAY NLSQVVIDWE AANAANYTIQ GSNNNSSWIT | 120 |
| LATRTGGSFG DRTDTVNVSG SYRYVRMNGT TRSVGNDWGY SIWEMAVYGS SNSNLPTPWN | 180 |
| NGDVGSPLPG SASFSNGVFN TTANGNDIWN NTDNFHFIYQ PFNGDGAIIA QVTSLSATHE | 240 |
| WAKAGVMLRE NLTGGSKNAM MAMTSSNGAI FQRRTAANGT SVSNSQGGVF TPYWVKLTRN | 300 |
| GNTLTGFSSF DGNTWTQVGT TTVSMNSNAY VGLAHTSHAA GTLGNAQFDQ VTVQAGAVCF | 360 |
| YENTNFGGAS FCRGAGAQNV PSGWGNRVSS VRVINGYSAV LRSQANQGGS SVTLTGDTAN | 420 |
| LANVGFDNLL ASYTISNQGS TDNMKVVGYM PSWSGSATAI QYDKLTHINY SFVLPNANGS | 480 |
| LQGVPSPSKL QSIVTLGHAN GVKVLIAVGG WNDGNDSAFE SLAANASTRT AFVNNLINLV | 540 |
| EQYNLDGVDM DWEYPDPGAS ADNYALLMGQ LSNALHARGK LLTAAVVASG YTGGGVKAEV | 600 |
| FNYIDFLNLM AYDGGNGSTH SPYSYAVSSL NYWLSRGLPK EKAVLGVPYY ARPSWAAYNT | 660 |
| LVGSNSANAC RDSNGSDYWN GIPTIRQKAQ LARSQAGGIM TWELSQDTNS ANSLLTAMYE | 720 |
| AVNGLGGSYN CN | 732 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.