CAZyme3D

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Entry ID

Information for CAZyme ID: ARP42901.1

Basic Information

GenBank IDARP42901.1
FamilyGH52
Sequence Length707
UniProt IDA0A1W6VS90(100,100)Download
Average pLDDT?97.11
CAZy50 ID30769
CAZy50 RepNo, CQR57255.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID33940
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusGeobacillus
SpeciesGeobacillus thermodenitrificans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIMPNNLFFN  AHHSPVGAFS  SFTLGFPGKS  GGLDLELARP  PRQNVFIGVE  SLHESGLYHV60
LPFWETSGED  ESKRYDIENP  DPNPQKPNIL  IPFAKEEIQR  EFHVATDTWK  AGDLTFTIYS120
PVKAVPDPET  ADEEELKLAL  VPAVIVEMKI  DNTNGTRARR  AFFGFEGTDP  YTSMRRIDET180
CPQLRGVGQG  RIVGIVSKDE  DVRSALHFSM  EDILTAQLEE  NWTFGLGKVG  ALIVDVPAGE240
KKTYQFAVCF  YRGGYVTAGM  DTSYFYTRFF  NNIEEVGLYA  LEKAEVLKEQ  SFRSNELIEK300
EWLSDDQKFM  MAHAIRSYYG  NTQLLEHEGK  PIWVVNEGEY  RMMNTFDLTV  DQLFFELKMN360
PWTVKNVLDL  YVERYSYEDG  VRFPGEETEY  PGGISFTHDM  GVANTFLRPH  HSSYELYGLS420
GCFSHMTHEQ  LVNWVLCAAV  YIEQTKDWAW  RDKRLAILEQ  CLESMVRRDH  PDPEKRNGIM480
GLDSTRTMGG  AEITTYDSLD  VSLGQARNNL  YLAGKCWAAY  VALEKLFHDV  GKEELAALAG540
EQAEKCAATI  VSYVTDDGYI  PAVMGEGNDS  KIIPAIEGLV  FPYFTNCHEA  LNKDGRFGEY600
IQALNAHLRY  VLREGICLFP  DGGWKISSTS  NNSWLSKIYL  CQFIARHLLG  WEWDEQGKRA660
DAAHVAWLTH  PTLSIWSWSD  QIIAGEIKAS  KYYPRGVTSI  LWLEEGE707

Predicted 3D structure by AlphaFold2 with pLDDT = 97.11 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH52(22-441)

MIMPNNLFFN  AHHSPVGAFS  SFTLGFPGKS  GGLDLELARP  PRQNVFIGVE  SLHESGLYHV60
LPFWETSGED  ESKRYDIENP  DPNPQKPNIL  IPFAKEEIQR  EFHVATDTWK  AGDLTFTIYS120
PVKAVPDPET  ADEEELKLAL  VPAVIVEMKI  DNTNGTRARR  AFFGFEGTDP  YTSMRRIDET180
CPQLRGVGQG  RIVGIVSKDE  DVRSALHFSM  EDILTAQLEE  NWTFGLGKVG  ALIVDVPAGE240
KKTYQFAVCF  YRGGYVTAGM  DTSYFYTRFF  NNIEEVGLYA  LEKAEVLKEQ  SFRSNELIEK300
EWLSDDQKFM  MAHAIRSYYG  NTQLLEHEGK  PIWVVNEGEY  RMMNTFDLTV  DQLFFELKMN360
PWTVKNVLDL  YVERYSYEDG  VRFPGEETEY  PGGISFTHDM  GVANTFLRPH  HSSYELYGLS420
GCFSHMTHEQ  LVNWVLCAAV  YIEQTKDWAW  RDKRLAILEQ  CLESMVRRDH  PDPEKRNGIM480
GLDSTRTMGG  AEITTYDSLD  VSLGQARNNL  YLAGKCWAAY  VALEKLFHDV  GKEELAALAG540
EQAEKCAATI  VSYVTDDGYI  PAVMGEGNDS  KIIPAIEGLV  FPYFTNCHEA  LNKDGRFGEY600
IQALNAHLRY  VLREGICLFP  DGGWKISSTS  NNSWLSKIYL  CQFIARHLLG  WEWDEQGKRA660
DAAHVAWLTH  PTLSIWSWSD  QIIAGEIKAS  KYYPRGVTSI  LWLEEGE707

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help