Information for CAZyme ID: ARK12465.1
Basic Information
| GenBank ID | ARK12465.1 |
| Family | GH20 |
| Sequence Length | 849 |
| UniProt ID | A0A1W6EAN0(100,100) |
| Average pLDDT? | 92.27 |
| CAZy50 ID | 23015 |
| CAZy50 Rep | Yes, ARK12465.1 |
| Structure Cluster | SC_GH20_clus21 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1834519 |
| Kingdom | Bacteria |
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Fibrella |
| Species | Fibrella sp. ES10-3-2-2 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MRFILPGMLL ATLPVWPCFS QSAPATRSST ASASQVRPLA ISLTLVSNDG KAGSRMALKL | 60 |
| QNTGTNPLPA TGWTLFFNGG SYTSTDASLA RVKPVNGDLH ALSPGAGFKS IAAGQSATIE | 120 |
| ITSRRLRNRT DFPSGFYLVL DSNLAQAFPV DVAVNMGNLF EASDRKLTER IFAQNAVIQP | 180 |
| VSDQQLTKVF PTPASYQETG QPFVLDGQTT IVAPAEFKPE ADFLVNSLVP ILSKKPAIKT | 240 |
| QGTGKTITLR KNSALATEAY ELQINQNGIV LSASARAGVF YGIQSLQTLI PASALSGKSG | 300 |
| SVQVPGLVVK DAPRFGYRAL MMDVARNFQP KSEVLKVLDL MGLYKLNVLH LHFSDDEGWR | 360 |
| VAMPSLPELT TVGGTRAYAA DQTQSLLPSY GSGPAASNPA GTGFYTKADF IDILTYARDR | 420 |
| HIEVIPEIES PGHARAALRA MDVRYQALLK AGKQADAERY LLRDLADKST YESVQGWRDN | 480 |
| VIDVALPSTY TFLERVIDDL IGMYREAGAP LKTIHMGGDE VPSGVWQKSP AVQRLMATNK | 540 |
| AIKSTDDLWY YYFGKMNQVL KKRGLFLSGW EEAGLKKVVQ NKKTVWVPNP TFAAERFRVN | 600 |
| VWKNEPGSGA EDLAYRMANA GYKVILTGVT HLYIDLAYNA MSEEAGQYWG GYVDIDKPFY | 660 |
| FIPYDYLRNL KDDNTGQRID QSRIRSREAI TEKGKANLVG IESPLWSETN RSPGQFEYKL | 720 |
| LPKLLAVAER AWAKDPAWAL EKDEKKSEQL YNQAWSAFLH TVGNRELPRL DTYAGGFAYR | 780 |
| IPTAGAKVVD NKLVANVQFP GLTIRYTTDG TEPTAASSVY TAPISFTSPI KLRVFNSAGR | 840 |
| AGQTVTIRQ | 849 |
Predicted 3D structure by AlphaFold2 with pLDDT = 92.27 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MRFILPGMLL ATLPVWPCFS QSAPATRSST ASASQVRPLA ISLTLVSNDG KAGSRMALKL | 60 |
| QNTGTNPLPA TGWTLFFNGG SYTSTDASLA RVKPVNGDLH ALSPGAGFKS IAAGQSATIE | 120 |
| ITSRRLRNRT DFPSGFYLVL DSNLAQAFPV DVAVNMGNLF EASDRKLTER IFAQNAVIQP | 180 |
| VSDQQLTKVF PTPASYQETG QPFVLDGQTT IVAPAEFKPE ADFLVNSLVP ILSKKPAIKT | 240 |
| QGTGKTITLR KNSALATEAY ELQINQNGIV LSASARAGVF YGIQSLQTLI PASALSGKSG | 300 |
| SVQVPGLVVK DAPRFGYRAL MMDVARNFQP KSEVLKVLDL MGLYKLNVLH LHFSDDEGWR | 360 |
| VAMPSLPELT TVGGTRAYAA DQTQSLLPSY GSGPAASNPA GTGFYTKADF IDILTYARDR | 420 |
| HIEVIPEIES PGHARAALRA MDVRYQALLK AGKQADAERY LLRDLADKST YESVQGWRDN | 480 |
| VIDVALPSTY TFLERVIDDL IGMYREAGAP LKTIHMGGDE VPSGVWQKSP AVQRLMATNK | 540 |
| AIKSTDDLWY YYFGKMNQVL KKRGLFLSGW EEAGLKKVVQ NKKTVWVPNP TFAAERFRVN | 600 |
| VWKNEPGSGA EDLAYRMANA GYKVILTGVT HLYIDLAYNA MSEEAGQYWG GYVDIDKPFY | 660 |
| FIPYDYLRNL KDDNTGQRID QSRIRSREAI TEKGKANLVG IESPLWSETN RSPGQFEYKL | 720 |
| LPKLLAVAER AWAKDPAWAL EKDEKKSEQL YNQAWSAFLH TVGNRELPRL DTYAGGFAYR | 780 |
| IPTAGAKVVD NKLVANVQFP GLTIRYTTDG TEPTAASSVY TAPISFTSPI KLRVFNSAGR | 840 |
| AGQTVTIRQ | 849 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.