CAZyme3D

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Entry ID

Information for CAZyme ID: ARJ05455.1

Basic Information

GenBank IDARJ05455.1
FamilyCBM20, GH15
Sequence Length810
UniProt IDA0A1X9LJS4(100,100)Download
Average pLDDT?93.56
CAZy50 ID26296
CAZy50 RepYes, ARJ05455.1
Structure ClusterSC_CBM20_clus20, SC_GH15_clus10
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1619308
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusCnuibacter
SpeciesCnuibacter physcomitrellae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHRRILSSAL  AVGIVAAGLG  FVPIPSATAA  PLVPLAPGAP  GVAATWTSGD  KHGLGTAVSD60
ASKVWYTLGS  GTTTEVFYPT  VDRPQVQDLQ  FVVTDGVSRT  YVERDDSVHE  TTLVDPEALE120
YRQTDTAKDG  SFRITKTYVT  SPGRQTLLID  TRFEQLSGTT  PLHLYVLFNP  STGGDGNANR180
GNTLDGMLIS  QGGPTSAALA  SSLGFGDTTT  GYSGTASDPY  RQLTADHRLS  TLYGGAATDG240
NIVQSAEITV  GRDTRFTLAL  GFGSTLNDAQ  GAASNALGDG  FAATESAYVA  GWRGYLSSLS300
PAPSSVAGTS  LETQYDVAVM  TLRAHEDKTV  RGAFVASLSV  PWGQAVPGTM  ANPGYHAIWA360
RDLYQVATAL  LAAGDRAGAA  RALDYMLNVQ  QRADGSMPHN  TMVDGSDTGL  TGIQLDEVAF420
PAVLASMLGR  SDSATWAKLK  LSADYLVSHG  PSTPQERWEE  QAGFSPSTIA  AEIAGLVASA480
DIAVKNGDRA  SATRYLDTAD  LWRASLESWT  VTHTGSIGTP  HYERIDPIGT  PDAGTTVCDT540
NGAGCTDARD  LVDGGFLELV  RLGIRSADDP  TIAASVAVVD  AQLRVDTPSG  AMWRRYNRDG600
YGEHADGSPF  NGTAGGIGRP  WPVLAGERGQ  YELANGRDAM  PYLRSMAATA  NDAYMIPEQV660
WDTADTGRFT  AGEATDSAAP  LAWAMAQYVR  LAQSISAGRN  VDTPAVVAAR  YATGVEATFR720
ANATTTWGES  LFVVGSIPAL  GSWDTSKAIR  LSSASYPDWA  VEVALPAGVS  LEYKYIRKSA780
DGTVTWESGA  NRTITLPGSG  TPVYRDTWRR  810

Predicted 3D structure by AlphaFold2 with pLDDT = 93.56 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MHRRILSSAL  AVGIVAAGLG  FVPIPSATAA  PLVPLAPGAP  GVAATWTSGD  KHGLGTAVSD60
ASKVWYTLGS  GTTTEVFYPT  VDRPQVQDLQ  FVVTDGVSRT  YVERDDSVHE  TTLVDPEALE120
YRQTDTAKDG  SFRITKTYVT  SPGRQTLLID  TRFEQLSGTT  PLHLYVLFNP  STGGDGNANR180
GNTLDGMLIS  QGGPTSAALA  SSLGFGDTTT  GYSGTASDPY  RQLTADHRLS  TLYGGAATDG240
NIVQSAEITV  GRDTRFTLAL  GFGSTLNDAQ  GAASNALGDG  FAATESAYVA  GWRGYLSSLS300
PAPSSVAGTS  LETQYDVAVM  TLRAHEDKTV  RGAFVASLSV  PWGQAVPGTM  ANPGYHAIWA360
RDLYQVATAL  LAAGDRAGAA  RALDYMLNVQ  QRADGSMPHN  TMVDGSDTGL  TGIQLDEVAF420
PAVLASMLGR  SDSATWAKLK  LSADYLVSHG  PSTPQERWEE  QAGFSPSTIA  AEIAGLVASA480
DIAVKNGDRA  SATRYLDTAD  LWRASLESWT  VTHTGSIGTP  HYERIDPIGT  PDAGTTVCDT540
NGAGCTDARD  LVDGGFLELV  RLGIRSADDP  TIAASVAVVD  AQLRVDTPSG  AMWRRYNRDG600
YGEHADGSPF  NGTAGGIGRP  WPVLAGERGQ  YELANGRDAM  PYLRSMAATA  NDAYMIPEQV660
WDTADTGRFT  AGEATDSAAP  LAWAMAQYVR  LAQSISAGRN  VDTPAVVAAR  YATGVEATFR720
ANATTTWGES  LFVVGSIPAL  GSWDTSKAIR  LSSASYPDWA  VEVALPAGVS  LEYKYIRKSA780
DGTVTWESGA  NRTITLPGSG  TPVYRDTWRR  810

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH15(320-692)+CBM20(715-801)

MHRRILSSAL  AVGIVAAGLG  FVPIPSATAA  PLVPLAPGAP  GVAATWTSGD  KHGLGTAVSD60
ASKVWYTLGS  GTTTEVFYPT  VDRPQVQDLQ  FVVTDGVSRT  YVERDDSVHE  TTLVDPEALE120
YRQTDTAKDG  SFRITKTYVT  SPGRQTLLID  TRFEQLSGTT  PLHLYVLFNP  STGGDGNANR180
GNTLDGMLIS  QGGPTSAALA  SSLGFGDTTT  GYSGTASDPY  RQLTADHRLS  TLYGGAATDG240
NIVQSAEITV  GRDTRFTLAL  GFGSTLNDAQ  GAASNALGDG  FAATESAYVA  GWRGYLSSLS300
PAPSSVAGTS  LETQYDVAVM  TLRAHEDKTV  RGAFVASLSV  PWGQAVPGTM  ANPGYHAIWA360
RDLYQVATAL  LAAGDRAGAA  RALDYMLNVQ  QRADGSMPHN  TMVDGSDTGL  TGIQLDEVAF420
PAVLASMLGR  SDSATWAKLK  LSADYLVSHG  PSTPQERWEE  QAGFSPSTIA  AEIAGLVASA480
DIAVKNGDRA  SATRYLDTAD  LWRASLESWT  VTHTGSIGTP  HYERIDPIGT  PDAGTTVCDT540
NGAGCTDARD  LVDGGFLELV  RLGIRSADDP  TIAASVAVVD  AQLRVDTPSG  AMWRRYNRDG600
YGEHADGSPF  NGTAGGIGRP  WPVLAGERGQ  YELANGRDAM  PYLRSMAATA  NDAYMIPEQV660
WDTADTGRFT  AGEATDSAAP  LAWAMAQYVR  LAQSISAGRN  VDTPAVVAAR  YATGVEATFR720
ANATTTWGES  LFVVGSIPAL  GSWDTSKAIR  LSSASYPDWA  VEVALPAGVS  LEYKYIRKSA780
DGTVTWESGA  NRTITLPGSG  TPVYRDTWRR  810

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help