CAZyme3D

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Entry ID

Information for CAZyme ID: AQV00496.1

Basic Information

GenBank IDAQV00496.1
FamilyPL29
Sequence Length613
UniProt IDS7TW91(100,100)Download
Average pLDDT?88.77
CAZy50 ID50586
CAZy50 RepYes, AQV00496.1
Structure ClusterSC_PL29_clus5
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID897
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfobacteria
OrderDesulfobacterales
FamilyDesulfococcaceae
GenusDesulfococcus
SpeciesDesulfococcus multivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTSPRLTVQK  PCAIIVFLIV  VMAGSLSGSD  PAPEDSTSGK  PVMDKAAGHA  WIPADWTAYQ60
RIGASGSGLP  DFSRAGYAMG  DRPIPHVSGP  VFDVTEQRFG  AVPGDDRDDT  AAIQAAIDTA120
GAAGGGVVFL  PRGRFDIRQT  GNAPYLRITR  DQVVLRGQGD  GTDGTVLFLG  SPGPAGTVRR180
LGSVPALKEP  RSGAAVAVIG  PENREFLARY  ISDLRRGERQ  VAVSDTSRLS  VGQSVVVEFE240
DPLIDTRNPH  PKKADLPVQL  THPFRLTADQ  TDTFGKTARR  LTWIVRIAQI  VDAHTVRLTN300
PARFDQWLRY  QPRIYAFRGV  SGVGIENLRI  ESRWPGNYRH  HKPHVGTDGA  VIRTAREQDY360
LWNGLWMSYA  LDGWVRNVTF  KDLTQGIIIS  HSTNLSVQDV  RFDGLDAHAG  ITIGRSNDVL420
VSGADFFARM  VHPVTLTMMA  SGNVVTDCEI  HYDGRDDETA  TDAVIDFHGI  FPFENLFDCL480
RGFYVCPGGD  MSVLPHAGVR  NVFWNIEAPR  QMRCYGQNTD  GEFVCTYAYQ  GTSSGTPRTM540
HEHLPQAFFI  GIRRSGGNPI  TIGGSILDRK  NEWLSVEGLN  RPGIAIPSLY  EAQRAGFSRE600
RREMDPVSEA  RRN613

Predicted 3D structure by AlphaFold2 with pLDDT = 88.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTSPRLTVQK  PCAIIVFLIV  VMAGSLSGSD  PAPEDSTSGK  PVMDKAAGHA  WIPADWTAYQ60
RIGASGSGLP  DFSRAGYAMG  DRPIPHVSGP  VFDVTEQRFG  AVPGDDRDDT  AAIQAAIDTA120
GAAGGGVVFL  PRGRFDIRQT  GNAPYLRITR  DQVVLRGQGD  GTDGTVLFLG  SPGPAGTVRR180
LGSVPALKEP  RSGAAVAVIG  PENREFLARY  ISDLRRGERQ  VAVSDTSRLS  VGQSVVVEFE240
DPLIDTRNPH  PKKADLPVQL  THPFRLTADQ  TDTFGKTARR  LTWIVRIAQI  VDAHTVRLTN300
PARFDQWLRY  QPRIYAFRGV  SGVGIENLRI  ESRWPGNYRH  HKPHVGTDGA  VIRTAREQDY360
LWNGLWMSYA  LDGWVRNVTF  KDLTQGIIIS  HSTNLSVQDV  RFDGLDAHAG  ITIGRSNDVL420
VSGADFFARM  VHPVTLTMMA  SGNVVTDCEI  HYDGRDDETA  TDAVIDFHGI  FPFENLFDCL480
RGFYVCPGGD  MSVLPHAGVR  NVFWNIEAPR  QMRCYGQNTD  GEFVCTYAYQ  GTSSGTPRTM540
HEHLPQAFFI  GIRRSGGNPI  TIGGSILDRK  NEWLSVEGLN  RPGIAIPSLY  EAQRAGFSRE600
RREMDPVSEA  RRN613

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL29(91-422)

MTSPRLTVQK  PCAIIVFLIV  VMAGSLSGSD  PAPEDSTSGK  PVMDKAAGHA  WIPADWTAYQ60
RIGASGSGLP  DFSRAGYAMG  DRPIPHVSGP  VFDVTEQRFG  AVPGDDRDDT  AAIQAAIDTA120
GAAGGGVVFL  PRGRFDIRQT  GNAPYLRITR  DQVVLRGQGD  GTDGTVLFLG  SPGPAGTVRR180
LGSVPALKEP  RSGAAVAVIG  PENREFLARY  ISDLRRGERQ  VAVSDTSRLS  VGQSVVVEFE240
DPLIDTRNPH  PKKADLPVQL  THPFRLTADQ  TDTFGKTARR  LTWIVRIAQI  VDAHTVRLTN300
PARFDQWLRY  QPRIYAFRGV  SGVGIENLRI  ESRWPGNYRH  HKPHVGTDGA  VIRTAREQDY360
LWNGLWMSYA  LDGWVRNVTF  KDLTQGIIIS  HSTNLSVQDV  RFDGLDAHAG  ITIGRSNDVL420
VSGADFFARM  VHPVTLTMMA  SGNVVTDCEI  HYDGRDDETA  TDAVIDFHGI  FPFENLFDCL480
RGFYVCPGGD  MSVLPHAGVR  NVFWNIEAPR  QMRCYGQNTD  GEFVCTYAYQ  GTSSGTPRTM540
HEHLPQAFFI  GIRRSGGNPI  TIGGSILDRK  NEWLSVEGLN  RPGIAIPSLY  EAQRAGFSRE600
RREMDPVSEA  RRN613

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help