CAZyme3D

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Entry ID

Information for CAZyme ID: AQS88134.1

Basic Information

GenBank IDAQS88134.1
FamilyGH23
Sequence Length233
UniProt IDA0A1U9KQL1(100,100)Download
Average pLDDT?71.23
CAZy50 ID175583
CAZy50 RepYes, AQS88134.1
Structure ClusterSC_GH23_clus128
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID320497
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodospirillales
FamilyAcetobacteraceae
GenusNeoasaia
SpeciesNeoasaia chiangmaiensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTGCKIGSRL  LGVMLPVVAS  MMIPGHVAVA  DPYADMIAEA  ATRAQIPASW  IAAVLHAESR60
GDAHAVSSAG  AMGLMQVMPS  TWASLRTSLG  LGDDPFDPHD  NILAGATYLR  WMRDRYGEAG120
FLAAYNAGPA  RYDEHLATGR  PLPVETRNYV  ASVSARLALP  LADNIAIGAP  LARSWQDSSL180
FPASFLRMGD  ASRPVESTHD  PARSSGSRLT  DWAALAPQSV  GLFIASGHGE  ARR233

Predicted 3D structure by AlphaFold2 with pLDDT = 71.23 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTGCKIGSRL  LGVMLPVVAS  MMIPGHVAVA  DPYADMIAEA  ATRAQIPASW  IAAVLHAESR60
GDAHAVSSAG  AMGLMQVMPS  TWASLRTSLG  LGDDPFDPHD  NILAGATYLR  WMRDRYGEAG120
FLAAYNAGPA  RYDEHLATGR  PLPVETRNYV  ASVSARLALP  LADNIAIGAP  LARSWQDSSL180
FPASFLRMGD  ASRPVESTHD  PARSSGSRLT  DWAALAPQSV  GLFIASGHGE  ARR233

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(40-155)

MTGCKIGSRL  LGVMLPVVAS  MMIPGHVAVA  DPYADMIAEA  ATRAQIPASW  IAAVLHAESR60
GDAHAVSSAG  AMGLMQVMPS  TWASLRTSLG  LGDDPFDPHD  NILAGATYLR  WMRDRYGEAG120
FLAAYNAGPA  RYDEHLATGR  PLPVETRNYV  ASVSARLALP  LADNIAIGAP  LARSWQDSSL180
FPASFLRMGD  ASRPVESTHD  PARSSGSRLT  DWAALAPQSV  GLFIASGHGE  ARR233

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help