CAZyme3D

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Entry ID

Information for CAZyme ID: AQR97380.1

Basic Information

GenBank IDAQR97380.1
FamilyGH43_10
Sequence Length541
UniProt IDM1N5K0(99.3,100)Download
Average pLDDT?91.35
CAZy50 ID60958
CAZy50 RepYes, AQR97380.1
Structure ClusterSC_GH43_clus6
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID36745
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium saccharoperbutylacetonicum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLKNKLYKKR  NYLNKIISMS  VLSFVLLASP  VLPANAYTSD  LGNGTYQNPV  MYADYPDNSV60
IKVGSTYYMG  CSSISYMPGL  PILKSQDLVN  WEICSYAYDR  IDVGMSGIDK  AHADAYNLVG120
GKNVYSKGCW  APSLKYNNGK  FYATFSSLDL  GKTFVCTRNA  PMDFGGWDFT  EIKGIGYAHD180
ADLFFDTDGR  VYLVNGGCTI  TELNTDCKSV  KAGGINKKIF  DGGSTHDGNR  IFKKNGYYYI240
LSTPVKDGGG  YQRIEKAWRS  KTLTGTYEQK  VILDDGANHQ  VCVVEDGSYN  WAALFEDKGA300
VGRIPKIAPV  TWINDWPMIG  VNGSGKVPAT  YNKPASGNGI  KSPDTSDDFT  KATAISSQWQ360
WNHNPDNSKW  SLSEHSGWLR  LKTSYAANLL  EARNTLAQRI  QGPKSSGWVK  LDATNIKPGQ420
ISGLSAFHSK  YGYIAVRNDN  GTKKLVQYNV  DGTETSINLD  NNTVYLKVDA  DCDTQIAKFY480
YSYDANSWTK  LGNNLKMDFF  YKLWFIGYRF  ALFNYTTGSD  TSGYADFDYF  KFSPTATGVG540
K541

Predicted 3D structure by AlphaFold2 with pLDDT = 91.35 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLKNKLYKKR  NYLNKIISMS  VLSFVLLASP  VLPANAYTSD  LGNGTYQNPV  MYADYPDNSV60
IKVGSTYYMG  CSSISYMPGL  PILKSQDLVN  WEICSYAYDR  IDVGMSGIDK  AHADAYNLVG120
GKNVYSKGCW  APSLKYNNGK  FYATFSSLDL  GKTFVCTRNA  PMDFGGWDFT  EIKGIGYAHD180
ADLFFDTDGR  VYLVNGGCTI  TELNTDCKSV  KAGGINKKIF  DGGSTHDGNR  IFKKNGYYYI240
LSTPVKDGGG  YQRIEKAWRS  KTLTGTYEQK  VILDDGANHQ  VCVVEDGSYN  WAALFEDKGA300
VGRIPKIAPV  TWINDWPMIG  VNGSGKVPAT  YNKPASGNGI  KSPDTSDDFT  KATAISSQWQ360
WNHNPDNSKW  SLSEHSGWLR  LKTSYAANLL  EARNTLAQRI  QGPKSSGWVK  LDATNIKPGQ420
ISGLSAFHSK  YGYIAVRNDN  GTKKLVQYNV  DGTETSINLD  NNTVYLKVDA  DCDTQIAKFY480
YSYDANSWTK  LGNNLKMDFF  YKLWFIGYRF  ALFNYTTGSD  TSGYADFDYF  KFSPTATGVG540
K541

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH43_10(47-317)+CBM91(346-535)

MLKNKLYKKR  NYLNKIISMS  VLSFVLLASP  ILPANAYTSD  LGNGTYQNPV  MYADYPDNSV60
IKVGSTYYMG  CSSISYMPGL  PILKSQDLVN  WEICSYAYDR  IDVGMNGIDK  AHADAYNLVG120
GKNVYSKGCW  APSLKYNNGK  FYATFSSLDL  GKTFVCTRNA  PMDFGGWDFT  EIKGIGYAHD180
ADLFFDTDGR  VYLVNGGCTI  TELNTDCKSV  KAGGINKKIF  DGGSTHDGNR  IFKKNGYYYI240
LSTPVKDGGG  YQRIEKAWRS  KTLTGTYEQK  VILDDGANHQ  VCVVEDGSYN  WAALFEDKGA300
VGRIPKIAPV  TWINDWPMIG  VNGSGKVPAT  YNKPASGNGI  KSPDTSDDFT  KATAISSQWQ360
WNHNPDNSKW  SLSEHPGWLR  LKTSYAANIL  EARNTLAQRI  QGPKSSGWVK  LDATNIKPGQ420
ISGLSAFHSK  YGYIAVRNDN  GTKKLVQYNV  DGTETSINLD  NNTVYLKVDA  DCDTQIAKFY480
YSYDANSWTK  LGNNLKMDFF  YKLWFIGYRF  ALFNYTTGSD  TSGYADFDYF  KFSPTATGVG540
K541

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help