CAZyme3D

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Entry ID

Information for CAZyme ID: AQR61204.1

Basic Information

GenBank IDAQR61204.1
FamilyGH16_5
Sequence Length991
UniProt IDA0A1S6ETE7(100,100)Download
Average pLDDT?85.20
CAZy50 ID14766
CAZy50 RepYes, AQR61204.1
Structure ClusterSC_GH16_clus110
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1938605
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCaulobacterales
FamilyCaulobacteraceae
GenusBrevundimonas
SpeciesBrevundimonas sp. LM2

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPSYWNYFGV  VMSEAPRPTS  YFRAQTPGAT  LTGSNGADQL  ADMAGGNRLS  GGADGDSYVV60
IDSRTRVVES  AGGGVDTITA  YSDFVAPTGV  EVLKILGNQK  TGVANDSGML  LTVNGLRSVL120
VGGAGNDVLV  DEGGGQTRFS  VARSGGYDVI  HNFTATGANH  DWIQLVGYGL  TRFDQVSALM180
TQVGSDVKIT  LSANDAVLIR  NVQMSNLSAQ  DFLLELSTDW  RTPAYQDNFN  TVNLRTGSGT240
TGWSTTFTSG  STDVWNGYSS  RTLTSNHELQ  LYVDPLLTGS  GKTPLGLNPF  SADAGILQIH300
ARPTTAAEQN  VLWGYDYASG  LLTTAGSFTQ  TYGYFEIRAQ  LPEQQGVWPA  FWLLPANRNG360
TAEIDVFEQV  GDDSVHQTVH  SSAAGSPART  GFSSLMPQAS  TGFHTYGVLW  TAQTITWYID420
GIATASVPTP  ADMHSPMYML  VNLAIGGDWP  GNPSPGFSGA  DLLVDYVRAY  SLDEMNRPLH480
VTSAVSTALA  DGYVRLTLTG  SADVNGTGNS  LDNTLIGNAG  ANTLDGGAGA  DAMSGGAGDD540
RYVVDHVGDT  AVEGVNEGWD  RVFSTVSYTI  GADIEGLSLS  GAASINGTGN  GLGNSMAGNG600
GANVLNGGAG  ADTINGYSGN  DTLIGGQGAD  QFAFARWTGA  DVINDFGLNG  EKDVIDVSAF660
KSAGIAVSLT  QQGSDVLVAM  ATGETILVRG  TSLANFEATA  VGYTFRPIVL  DISASVSTIL720
GDGHLRLTLS  GAANVNGTGN  SLDNTLIGNA  GANTLDGGAG  ADTMSGGAGD  DRYVVDNVGD780
VVVERVNEGW  DRVTSTVSYT  IGANIEGLSL  AGAASINATG  NSLGNSMAGS  TGANVMDGGA840
GADTINGYSG  NDTLIGGEGA  DQFVFTRWTG  ADTINDFGLD  GERDVIDVSA  FTSAGIASSL900
RQQGSDALIS  LATGETILVK  NVQLADLQID  PAGYAYEPTA  LRNLSASQGV  FSQVLADDAA960
VDAELSDNYL  TDLHHFVAPA  AFAGVDPGWL  F991

Predicted 3D structure by AlphaFold2 with pLDDT = 85.20 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPSYWNYFGV  VMSEAPRPTS  YFRAQTPGAT  LTGSNGADQL  ADMAGGNRLS  GGADGDSYVV60
IDSRTRVVES  AGGGVDTITA  YSDFVAPTGV  EVLKILGNQK  TGVANDSGML  LTVNGLRSVL120
VGGAGNDVLV  DEGGGQTRFS  VARSGGYDVI  HNFTATGANH  DWIQLVGYGL  TRFDQVSALM180
TQVGSDVKIT  LSANDAVLIR  NVQMSNLSAQ  DFLLELSTDW  RTPAYQDNFN  TVNLRTGSGT240
TGWSTTFTSG  STDVWNGYSS  RTLTSNHELQ  LYVDPLLTGS  GKTPLGLNPF  SADAGILQIH300
ARPTTAAEQN  VLWGYDYASG  LLTTAGSFTQ  TYGYFEIRAQ  LPEQQGVWPA  FWLLPANRNG360
TAEIDVFEQV  GDDSVHQTVH  SSAAGSPART  GFSSLMPQAS  TGFHTYGVLW  TAQTITWYID420
GIATASVPTP  ADMHSPMYML  VNLAIGGDWP  GNPSPGFSGA  DLLVDYVRAY  SLDEMNRPLH480
VTSAVSTALA  DGYVRLTLTG  SADVNGTGNS  LDNTLIGNAG  ANTLDGGAGA  DAMSGGAGDD540
RYVVDHVGDT  AVEGVNEGWD  RVFSTVSYTI  GADIEGLSLS  GAASINGTGN  GLGNSMAGNG600
GANVLNGGAG  ADTINGYSGN  DTLIGGQGAD  QFAFARWTGA  DVINDFGLNG  EKDVIDVSAF660
KSAGIAVSLT  QQGSDVLVAM  ATGETILVRG  TSLANFEATA  VGYTFRPIVL  DISASVSTIL720
GDGHLRLTLS  GAANVNGTGN  SLDNTLIGNA  GANTLDGGAG  ADTMSGGAGD  DRYVVDNVGD780
VVVERVNEGW  DRVTSTVSYT  IGANIEGLSL  AGAASINATG  NSLGNSMAGS  TGANVMDGGA840
GADTINGYSG  NDTLIGGEGA  DQFVFTRWTG  ADTINDFGLD  GERDVIDVSA  FTSAGIASSL900
RQQGSDALIS  LATGETILVK  NVQLADLQID  PAGYAYEPTA  LRNLSASQGV  FSQVLADDAA960
VDAELSDNYL  TDLHHFVAPA  AFAGVDPGWL  F991

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH16_5(227-470)

MPSYWNYFGV  VMSEAPRPTS  YFRAQTPGAT  LTGSNGADQL  ADMAGGNRLS  GGADGDSYVV60
IDSRTRVVES  AGGGVDTITA  YSDFVAPTGV  EVLKILGNQK  TGVANDSGML  LTVNGLRSVL120
VGGAGNDVLV  DEGGGQTRFS  VARSGGYDVI  HNFTATGANH  DWIQLVGYGL  TRFDQVSALM180
TQVGSDVKIT  LSANDAVLIR  NVQMSNLSAQ  DFLLELSTDW  RTPAYQDNFN  TVNLRTGSGT240
TGWSTTFTSG  STDVWNGYSS  RTLTSNHELQ  LYVDPLLTGS  GKTPLGLNPF  SADAGILQIH300
ARPTTAAEQN  VLWGYDYASG  LLTTAGSFTQ  TYGYFEIRAQ  LPEQQGVWPA  FWLLPANRNG360
TAEIDVFEQV  GDDSVHQTVH  SSAAGSPART  GFSSLMPQAS  TGFHTYGVLW  TAQTITWYID420
GIATASVPTP  ADMHSPMYML  VNLAIGGDWP  GNPSPGFSGA  DLLVDYVRAY  SLDEMNRPLH480
VTSAVSTALA  DGYVRLTLTG  SADVNGTGNS  LDNTLIGNAG  ANTLDGGAGA  DAMSGGAGDD540
RYVVDHVGDT  AVEGVNEGWD  RVFSTVSYTI  GADIEGLSLS  GAASINGTGN  GLGNSMAGNG600
GANVLNGGAG  ADTINGYSGN  DTLIGGQGAD  QFAFARWTGA  DVINDFGLNG  EKDVIDVSAF660
KSAGIAVSLT  QQGSDVLVAM  ATGETILVRG  TSLANFEATA  VGYTFRPIVL  DISASVSTIL720
GDGHLRLTLS  GAANVNGTGN  SLDNTLIGNA  GANTLDGGAG  ADTMSGGAGD  DRYVVDNVGD780
VVVERVNEGW  DRVTSTVSYT  IGANIEGLSL  AGAASINATG  NSLGNSMAGS  TGANVMDGGA840
GADTINGYSG  NDTLIGGEGA  DQFVFTRWTG  ADTINDFGLD  GERDVIDVSA  FTSAGIASSL900
RQQGSDALIS  LATGETILVK  NVQLADLQID  PAGYAYEPTA  LRNLSASQGV  FSQVLADDAA960
VDAELSDNYL  TDLHHFVAPA  AFAGVDPGWL  F991

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help