CAZyme3D

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Entry ID

Information for CAZyme ID: AQA25521.1

Basic Information

GenBank IDAQA25521.1
FamilyGH5_29
Sequence Length802
UniProt IDA0A1P8YP48(100,100)Download
Average pLDDT?89.71
CAZy50 ID27123
CAZy50 RepYes, AQA25521.1
Structure ClusterSC_GH5_clus306
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1805827
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus sp. MTM3W5.2

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNGMCRMSSN  RLAWIATLAL  GLLVIVQAAA  DPSGLLSLLG  WTGADLWPIR  APWQIAPFVV60
YLPVLLGVTW  WAVRSIAGSR  WLFAATTGSV  VLAVLLAKFA  MSLVAAGDLG  TAAWGSGFAL120
AKAIPAGLIV  AGVVAIAGRS  RSVADAPDDA  PSVWAGALLF  GAIAPLLAGQ  WWAGAPYDRW180
MPAPNVLNGV  LATVGGIVVL  ALGAIGCQRV  LGRRVAGGTA  ATFLAGWFAA  MGAGALLALA240
ASIVGMVSDD  GFAGDLWPLM  GGYIRLADGV  AYGACTGWIV  GLAAVWSRRQ  STQPSPIPRP300
ALRAGAVTLA  AVAVAVPFLA  RPDAQPASPA  PIDSVEAGTL  LPLRVSGEVI  ADAAGREVLL360
RGVNVNQLVD  FYAPRPEVPS  TLPLTDADFA  GIADHGFNVV  RLALSWSALE  PERGRYDEAY420
VDQIRVAVAQ  AKAHGLYTVL  DMHQDGWSNA  PSPDDVSCRP  GTSPMWGYDG  APEWATITDG480
APRCQFTGRD  ISPAGGRAFN  NFYYDTDGVQ  EQLVQAWAML  AGEFKDEDAV  AGYDLLNEPN540
FGESAPLTSS  LLLGRFYDRT  IDAIREAGAE  QIVYFEPSIL  WSGLGFDSGP  PAGFTDDTNI600
VFSPHLYAES  ITMDASLGLP  TIVSIERGFT  LADRVAHKYG  DIPVWTGEYG  YWGDGLVDKA660
ARFAQEQDAH  IQGGTYWVWK  QACGDPQNGI  QELGNGLMPV  LCSTGEDAPR  NTALLDVLTR720
AYPRYAPGRI  THLAAEGDRL  ELTGTAGEGS  CRLEVWFPSP  IGTDPSAVDT  VGVEDVAFTP780
LGEGSLMTGC  ATGDYEVRTG  GA802

Predicted 3D structure by AlphaFold2 with pLDDT = 89.71 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNGMCRMSSN  RLAWIATLAL  GLLVIVQAAA  DPSGLLSLLG  WTGADLWPIR  APWQIAPFVV60
YLPVLLGVTW  WAVRSIAGSR  WLFAATTGSV  VLAVLLAKFA  MSLVAAGDLG  TAAWGSGFAL120
AKAIPAGLIV  AGVVAIAGRS  RSVADAPDDA  PSVWAGALLF  GAIAPLLAGQ  WWAGAPYDRW180
MPAPNVLNGV  LATVGGIVVL  ALGAIGCQRV  LGRRVAGGTA  ATFLAGWFAA  MGAGALLALA240
ASIVGMVSDD  GFAGDLWPLM  GGYIRLADGV  AYGACTGWIV  GLAAVWSRRQ  STQPSPIPRP300
ALRAGAVTLA  AVAVAVPFLA  RPDAQPASPA  PIDSVEAGTL  LPLRVSGEVI  ADAAGREVLL360
RGVNVNQLVD  FYAPRPEVPS  TLPLTDADFA  GIADHGFNVV  RLALSWSALE  PERGRYDEAY420
VDQIRVAVAQ  AKAHGLYTVL  DMHQDGWSNA  PSPDDVSCRP  GTSPMWGYDG  APEWATITDG480
APRCQFTGRD  ISPAGGRAFN  NFYYDTDGVQ  EQLVQAWAML  AGEFKDEDAV  AGYDLLNEPN540
FGESAPLTSS  LLLGRFYDRT  IDAIREAGAE  QIVYFEPSIL  WSGLGFDSGP  PAGFTDDTNI600
VFSPHLYAES  ITMDASLGLP  TIVSIERGFT  LADRVAHKYG  DIPVWTGEYG  YWGDGLVDKA660
ARFAQEQDAH  IQGGTYWVWK  QACGDPQNGI  QELGNGLMPV  LCSTGEDAPR  NTALLDVLTR720
AYPRYAPGRI  THLAAEGDRL  ELTGTAGEGS  CRLEVWFPSP  IGTDPSAVDT  VGVEDVAFTP780
LGEGSLMTGC  ATGDYEVRTG  GA802

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_29(350-688)

MNGMCRMSSN  RLAWIATLAL  GLLVIVQAAA  DPSGLLSLLG  WTGADLWPIR  APWQIAPFVV60
YLPVLLGVTW  WAVRSIAGSR  WLFAATTGSV  VLAVLLAKFA  MSLVAAGDLG  TAAWGSGFAL120
AKAIPAGLIV  AGVVAIAGRS  RSVADAPDDA  PSVWAGALLF  GAIAPLLAGQ  WWAGAPYDRW180
MPAPNVLNGV  LATVGGIVVL  ALGAIGCQRV  LGRRVAGGTA  ATFLAGWFAA  MGAGALLALA240
ASIVGMVSDD  GFAGDLWPLM  GGYIRLADGV  AYGACTGWIV  GLAAVWSRRQ  STQPSPIPRP300
ALRAGAVTLA  AVAVAVPFLA  RPDAQPASPA  PIDSVEAGTL  LPLRVSGEVI  ADAAGREVLL360
RGVNVNQLVD  FYAPRPEVPS  TLPLTDADFA  GIADHGFNVV  RLALSWSALE  PERGRYDEAY420
VDQIRVAVAQ  AKAHGLYTVL  DMHQDGWSNA  PSPDDVSCRP  GTSPMWGYDG  APEWATITDG480
APRCQFTGRD  ISPAGGRAFN  NFYYDTDGVQ  EQLVQAWAML  AGEFKDEDAV  AGYDLLNEPN540
FGESAPLTSS  LLLGRFYDRT  IDAIREAGAE  QIVYFEPSIL  WSGLGFDSGP  PAGFTDDTNI600
VFSPHLYAES  ITMDASLGLP  TIVSIERGFT  LADRVAHKYG  DIPVWTGEYG  YWGDGLVDKA660
ARFAQEQDAH  IQGGTYWVWK  QACGDPQNGI  QELGNGLMPV  LCSTGEDAPR  NTALLDVLTR720
AYPRYAPGRI  THLAAEGDRL  ELTGTAGEGS  CRLEVWFPSP  IGTDPSAVDT  VGVEDVAFTP780
LGEGSLMTGC  ATGDYEVRTG  GA802

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help