CAZyme3D

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Entry ID

Information for CAZyme ID: AQA12529.1

Basic Information

GenBank IDAQA12529.1
FamilyCBM35
Sequence Length327
UniProt IDA0A1P8XWD6(100,100)Download
Average pLDDT?65.51
CAZy50 ID127182
CAZy50 RepNo, QNJ41798.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID75293
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces autolyticus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTAGNNGSGT  PENDDPFAYL  YRSEGDQGTE  GGQSGQPGAA  PRTGGYGYPG  PAQPGVPRTS60
YNQVRAVGER  NYGQQVPNQQ  PQGYGQQGGY  GRQNAHYAAP  ETLPGGAPRQ  PGAAPRGGHG120
GGGRGPNNKG  LLIGAIAVVA  VVIVGIGVAM  ITNGDDKKDD  QADPTGQPTA  GSSVRPGEPS180
GPAKGGDEKL  PTEDAAKMRL  TGGAAAASTI  QGAKAEGGSY  VAGLNTPGAS  ATWSLDVDKP240
KTYRLYVTYG  VPGADQSMSL  TVNGKKEARP  LNMKNFAGAP  KGDYEKGWTE  TWSIVQLNKG300
TNTITVSCEA  GDKCDANIDQ  MWLDNKG327

Predicted 3D structure by AlphaFold2 with pLDDT = 65.51 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM35(208-320)

MTAGNNGSGT  PENDDPFAYL  YRSEGDQGTE  GGQSGQPGAA  PRTGGYGYPG  PAQPGVPRTS60
YNQVRAVGER  NYGQQVPNQQ  PQGYGQQGGY  GRQNAHYAAP  ETLPGGAPRQ  PGAAPRGGHG120
GGGRGPNNKG  LLIGAIAVVA  VVIVGIGVAM  ITNGDDKKDD  QADPTGQPTA  GSSVRPGEPS180
GPAKGGDEKL  PTEDAAKMRL  TGGAAAASTI  QGAKAEGGSY  VAGLNTPGAS  ATWSLDVDKP240
KTYRLYVTYG  VPGADQSMSL  TVNGKKEARP  LNMKNFAGAP  KGDYEKGWTE  TWSIVQLNKG300
TNTITVSCEA  GDKCDANIDQ  MWLDNKG327

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help