Information for CAZyme ID: APV50395.1
Basic Information
| GenBank ID | APV50395.1 |
| Family | GH20 |
| Sequence Length | 760 |
| UniProt ID | A0A1P8FK29(100,100) |
| Average pLDDT? | 91.70 |
| CAZy50 ID | 31597 |
| CAZy50 Rep | Yes, APV50395.1 |
| Structure Cluster | SC_GH20_clus161 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1904640 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | |
| Family | |
| Genus | |
| Species | Betaproteobacteria bacterium GR16-43 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MRIPCFAGPI LGLGLALALS SVAADEIAIV PNPASIERQE GPPFAFRTSA VVVAAPGDRD | 60 |
| AQSAALMLGA MIERQHGIKT VVQKNIPQPH AIMLSRANPA LPSEGYRIEV KPEKVTIFAS | 120 |
| GPAGFFYGSV TLVQMIDKRT IPAVTIDDAP RFRWRGLMLD SARHYQSPAF VKKLIDAMAM | 180 |
| NKLNVLHWHL TDDQAWRLEI KKYPKLTSVG AWRVPAGQAP RKDIDPKTGK PRLYGGFYTQ | 240 |
| AQVREIVAYA AQRAITIVPE IEMPGHATAA IAAYPWLSAI ADPPRAVPAD WGIYPHAYNL | 300 |
| DDKTFRFLED VLDEVFALFP SPYIHVGGDE VEKSQWKASA AGQARMKAMG TEDPEKLQAY | 360 |
| FTERIAKYVA SKKRRLVGWD EVLEPGLPKH AVVMSWRGID GALKAAAQGH DTILAAHPTL | 420 |
| YFDSRTSGRP DEPPGRGTVI SMKDVYAFEP MPEKLSPLER RHVLGLQGQV WTEHVRTEER | 480 |
| VAHMTFPRSA AVAELGWSNP GRRQWRDFLR RVSAQFPRYE AMGFPVADSG FAARATVVPA | 540 |
| EAGSQSVELA NGFNYGEIRY TLDGSEPTAK SPRYEIPVKV APGVVLRATT FDGERRISNP | 600 |
| RTLATDPAHA TRRASQQLKL CSEHIALSLE DDAPLNGPRA AFLVDIQNPC WIYEGADLAN | 660 |
| VKGITASVGQ VPFNYQIGEL VKQIHFPKPA TPEGELEVRL GCDGDVIARL PLAPAASHMG | 720 |
| VTTLPTASIA PRTGRVNLCM RFSQPALEPF WVLDTIELAR | 760 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.70 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MRIPCFAGPI LGLGLALALS SVAADEIAIV PNPASIERQE GPPFAFRTSA VVVAAPGDRD | 60 |
| AQSAALMLGA MIERQHGIKT VVQKNIPQPH AIMLSRANPA LPSEGYRIEV KPEKVTIFAS | 120 |
| GPAGFFYGSV TLVQMIDKRT IPAVTIDDAP RFRWRGLMLD SARHYQSPAF VKKLIDAMAM | 180 |
| NKLNVLHWHL TDDQAWRLEI KKYPKLTSVG AWRVPAGQAP RKDIDPKTGK PRLYGGFYTQ | 240 |
| AQVREIVAYA AQRAITIVPE IEMPGHATAA IAAYPWLSAI ADPPRAVPAD WGIYPHAYNL | 300 |
| DDKTFRFLED VLDEVFALFP SPYIHVGGDE VEKSQWKASA AGQARMKAMG TEDPEKLQAY | 360 |
| FTERIAKYVA SKKRRLVGWD EVLEPGLPKH AVVMSWRGID GALKAAAQGH DTILAAHPTL | 420 |
| YFDSRTSGRP DEPPGRGTVI SMKDVYAFEP MPEKLSPLER RHVLGLQGQV WTEHVRTEER | 480 |
| VAHMTFPRSA AVAELGWSNP GRRQWRDFLR RVSAQFPRYE AMGFPVADSG FAARATVVPA | 540 |
| EAGSQSVELA NGFNYGEIRY TLDGSEPTAK SPRYEIPVKV APGVVLRATT FDGERRISNP | 600 |
| RTLATDPAHA TRRASQQLKL CSEHIALSLE DDAPLNGPRA AFLVDIQNPC WIYEGADLAN | 660 |
| VKGITASVGQ VPFNYQIGEL VKQIHFPKPA TPEGELEVRL GCDGDVIARL PLAPAASHMG | 720 |
| VTTLPTASIA PRTGRVNLCM RFSQPALEPF WVLDTIELAR | 760 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.