Information for CAZyme ID: APR80535.1
Basic Information
| GenBank ID | APR80535.1 |
| Family | GH43_5 |
| Sequence Length | 908 |
| UniProt ID | APR80535.1(MOD) |
| Average pLDDT? | 88.17 |
| CAZy50 ID | 18882 |
| CAZy50 Rep | Yes, APR80535.1 |
| Structure Cluster | SC_GH43_clus36 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 888845 |
| Kingdom | Bacteria |
| Phylum | Myxococcota |
| Class | |
| Order | Polyangiales |
| Family | Polyangiaceae |
| Genus | Minicystis |
| Species | Minicystis rosea |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MRRRLVALPF CSIALACLGC ASDTEEAASP IHQDRSFTAS EILGFEVASG WQGPGVLGTG | 60 |
| GTRTEGAASL AVRPSNHAIY TSAPFALDGP PRRIRLDIAR PATPPNGPGA ARIFLECSDV | 120 |
| DMHDAYVGQR DLGGLPLGAF GTIDFEVPAQ LQKRLARGCS RLRVKIGLDV SGSPGTYRLD | 180 |
| NLRILTDLLL HYRFDDASAP AVDSSGYGRH GTLAGAAELS ASGRSGSALS LDGSSAYVTL | 240 |
| PDAITDGLEE ITVAAWVNMA ADRAWSRIFD FGGSAGFLYF TPSIGNGQLR FSTYAGFGNE | 300 |
| GTVLGPSLPV GVWKHVAVTS RGNDYRVYVD GVEADNQLTV PVKPADIGAN ALGNWIGRSR | 360 |
| FADPLLAGRL DDFRIYDRAL SAREIRSLAA PGGDYMNYRF DDSDCAASSG TIVTDASDLG | 420 |
| RDGVLVGVGT FGSGLYQRDL TLLGDGGHVA LPAGIVESCQ DFTASAWVEL HGNAAWNRVF | 480 |
| DFGNADHSSF MYLTPAGFGA QGQEIHFGLV APTGIVDMGY PFTMPLGEWS HLAVVQAGST | 540 |
| LTLYYNGRSV QTRTGVTVTP ASMGHTLQNY FGKSQFADPA FDGALDDVRI ACRAYGANEI | 600 |
| RQLAHLPLRV SPKHQAVLGD ITNVHDPSIA SAAGRYYLFS TGAGLPVRTS PDLATWTSAG | 660 |
| TVFAQNPAWV VQRFGELDSL WAPDISYFNG AYHLYYAAST FGSNHSCIGH ATKADLGSAS | 720 |
| PFTDLGPVIC SNEGTVDDWN AIDPHVVLDE NGTPWMSLGS FWSGIKLVRL TAEGTLAESV | 780 |
| LHDLASPPST AIEGSYIVRR GSYHYLFASF DSCCQGANST YKVKVGRSTK LTGPYLDRTG | 840 |
| LDMRAGGGTL VVEGDSRWAG PGGNAVMRTT GDVWWNVYHA YDTLNGGTPT LRISELKWQD | 900 |
| GWPVSGEP | 908 |
Predicted 3D structure by AlphaFold2 with pLDDT = 88.17 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MRRRLVALPF CSIALACLGC ASDTEEAASP IHQDRSFTAS EILGFEVASG WQGPGVLGTG | 60 |
| GTRTEGAASL AVRPSNHAIY TSAPFALDGP PRRIRLDIAR PATPPNGPGA ARIFLECSDV | 120 |
| DMHDAYVGQR DLGGLPLGAF GTIDFEVPAQ LQKRLARGCS RLRVKIGLDV SGSPGTYRLD | 180 |
| NLRILTDLLL HYRFDDASAP AVDSSGYGRH GTLAGAAELS ASGRSGSALS LDGSSAYVTL | 240 |
| PDAITDGLEE ITVAAWVNMA ADRAWSRIFD FGGSAGFLYF TPSIGNGQLR FSTYAGFGNE | 300 |
| GTVLGPSLPV GVWKHVAVTS RGNDYRVYVD GVEADNQLTV PVKPADIGAN ALGNWIGRSR | 360 |
| FADPLLAGRL DDFRIYDRAL SAREIRSLAA PGGDYMNYRF DDSDCAASSG TIVTDASDLG | 420 |
| RDGVLVGVGT FGSGLYQRDL TLLGDGGHVA LPAGIVESCQ DFTASAWVEL HGNAAWNRVF | 480 |
| DFGNADHSSF MYLTPAGFGA QGQEIHFGLV APTGIVDMGY PFTMPLGEWS HLAVVQAGST | 540 |
| LTLYYNGRSV QTRTGVTVTP ASMGHTLQNY FGKSQFADPA FDGALDDVRI ACRAYGANEI | 600 |
| RQLAHLPLRV SPKHQAVLGD ITNVHDPSIA SAAGRYYLFS TGAGLPVRTS PDLATWTSAG | 660 |
| TVFAQNPAWV VQRFGELDSL WAPDISYFNG AYHLYYAAST FGSNHSCIGH ATKADLGSAS | 720 |
| PFTDLGPVIC SNEGTVDDWN AIDPHVVLDE NGTPWMSLGS FWSGIKLVRL TAEGTLAESV | 780 |
| LHDLASPPST AIEGSYIVRR GSYHYLFASF DSCCQGANST YKVKVGRSTK LTGPYLDRTG | 840 |
| LDMRAGGGTL VVEGDSRWAG PGGNAVMRTT GDVWWNVYHA YDTLNGGTPT LRISELKWQD | 900 |
| GWPVSGEP | 908 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.