CAZyme3D

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Entry ID

Information for CAZyme ID: APR79042.1

Basic Information

GenBank IDAPR79042.1
FamilyGH5_2
Sequence Length501
UniProt IDAPR79042.1(MOD)Download
Average pLDDT?85.73
CAZy50 ID68623
CAZy50 RepYes, APR79042.1
Structure ClusterSC_GH5_clus149
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID888845
KingdomBacteria
PhylumMyxococcota
Class
OrderPolyangiales
FamilyPolyangiaceae
GenusMinicystis
SpeciesMinicystis rosea

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKQISLQGTW  SRAGFSLLTS  AVLVTAGIGC  VGEPLDDENE  QFASVDVPLT  APLIEHGALH60
VSGTHLQDEH  GANVQLKGMS  LFWSQWSSQF  YNSGAIGTIA  DDWHGSVIRA  AMGVEEGGYL120
ANPAAEKAHV  VSAVNAAVAK  GIYVIIDWHD  HNATQHTAQS  KQFFTEMAQT  YKNTPNVIFE180
IYNEPVNVSW  GQVKSYAQEV  IGAIRGAGAN  NVVIVGTPTW  SQDVDAAAND  PITAYTNVAY240
TLHFYAGTHK  QAIRDKASYA  ISKGLALFVT  EWGTCDASGN  GGLDLNESQT  WINFLNQNGL300
SWANWSLFDK  QETASALNPG  ASTTGGWPDS  ALTASGAFVK  AKMLEGTSNP  NPPSTTTGGG360
TPPGGPGDVT  GRVTIRALAD  NKLVCADNYG  ASQLIANRDL  ASTWEEFDVF  ANSDGSVSLR420
ALANGRFVTA  ENGGQSPLIA  NRTSIGDWES  FYPSKNSDGS  VSFKAKANGL  YVCADNGGQS480
PLIANRDSVS  TWEKFWVNPA  P501

Predicted 3D structure by AlphaFold2 with pLDDT = 85.73 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKQISLQGTW  SRAGFSLLTS  AVLVTAGIGC  VGEPLDDENE  QFASVDVPLT  APLIEHGALH60
VSGTHLQDEH  GANVQLKGMS  LFWSQWSSQF  YNSGAIGTIA  DDWHGSVIRA  AMGVEEGGYL120
ANPAAEKAHV  VSAVNAAVAK  GIYVIIDWHD  HNATQHTAQS  KQFFTEMAQT  YKNTPNVIFE180
IYNEPVNVSW  GQVKSYAQEV  IGAIRGAGAN  NVVIVGTPTW  SQDVDAAAND  PITAYTNVAY240
TLHFYAGTHK  QAIRDKASYA  ISKGLALFVT  EWGTCDASGN  GGLDLNESQT  WINFLNQNGL300
SWANWSLFDK  QETASALNPG  ASTTGGWPDS  ALTASGAFVK  AKMLEGTSNP  NPPSTTTGGG360
TPPGGPGDVT  GRVTIRALAD  NKLVCADNYG  ASQLIANRDL  ASTWEEFDVF  ANSDGSVSLR420
ALANGRFVTA  ENGGQSPLIA  NRTSIGDWES  FYPSKNSDGS  VSFKAKANGL  YVCADNGGQS480
PLIANRDSVS  TWEKFWVNPA  P501

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_2(70-304)

MKQISLQGTW  SRAGFSLLTS  AVLVTAGIGC  VGEPLDDENE  QFASVDVPLT  APLIEHGALH60
VSGTHLQDEH  GANVQLKGMS  LFWSQWSSQF  YNSGAIGTIA  DDWHGSVIRA  AMGVEEGGYL120
ANPAAEKAHV  VSAVNAAVAK  GIYVIIDWHD  HNATQHTAQS  KQFFTEMAQT  YKNTPNVIFE180
IYNEPVNVSW  GQVKSYAQEV  IGAIRGAGAN  NVVIVGTPTW  SQDVDAAAND  PITAYTNVAY240
TLHFYAGTHK  QAIRDKASYA  ISKGLALFVT  EWGTCDASGN  GGLDLNESQT  WINFLNQNGL300
SWANWSLFDK  QETASALNPG  ASTTGGWPDS  ALTASGAFVK  AKMLEGTSNP  NPPSTTTGGG360
TPPGGPGDVT  GRVTIRALAD  NKLVCADNYG  ASQLIANRDL  ASTWEEFDVF  ANSDGSVSLR420
ALANGRFVTA  ENGGQSPLIA  NRTSIGDWES  FYPSKNSDGS  VSFKAKANGL  YVCADNGGQS480
PLIANRDSVS  TWEKFWVNPA  P501

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help