CAZyme3D

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Entry ID

Information for CAZyme ID: APF21221.1

Basic Information

GenBank IDAPF21221.1
FamilyGH2
Sequence Length943
UniProt IDAPF21221.1(MOD)Download
Average pLDDT?82.48
CAZy50 ID16961
CAZy50 RepYes, APF21221.1
Structure ClusterSC_GH2_clus103
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1492
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium butyricum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPDIYDIQRE  KITKKCFDAI  LKEDISFLPQ  KFNSDYYKCL  SDVSEKIINI  FNNSSNAVQT60
NTINLNNGWD  FKKYGDTSTV  KINLPHQYDN  PRDRSSVLKG  KTIYSKNLFI  SDINKDSFKY120
YLQINSASFK  SEIFVNDISI  LTHNGSYENF  FADVTSNITS  GTNTIRIEID  NSNTGKNIIP180
LEADFSFVNG  IFRDVNLIKL  SDVYYSFDVY  GSTRTMIETS  NITVDSADLK  VKTVIKNISG240
KNKNLKVVYS  IFCNKKRIDT  HSDSFEMIDS  EIQVEQKFTI  LNPEIWDGLK  KGNLYNIQIC300
LYDSEKHVDT  INTSTGFRTV  SSNKDGFILN  GKTYPLRGIN  RHAENELNGF  AITKADHDTD360
FEMIKELGVN  AIRLAHYPQD  RYFIDKCNEY  GIVIYIEIPW  VNLYPSTDIN  DDLSNNIRFQ420
FKEMIKEYYN  YPCICFWGMH  NELTNDNNSS  GTKLINYTLC  KQLNNELYTY  AKNNGGNRLV480
GYATIDKTTH  EKEAGLNGDY  YGTNVYFGWY  NTDKIKNISE  YLDLKHATTN  DLIIFTEYGA540
GSNAMQFNLD  IETLNWGGIS  KDSNFSANGN  YHPQEYQCLI  HEGYLKSFLD  RNYINTFAWV600
FSDFAVSFRN  EGSQKALNDK  GFVTRDRKIK  KDVFYLYKAF  LNKNDKFVHI  NQKDFNIREN660
KNNTTNLTVY  SNCDFVTLIK  DNKIIDKQIA  DINLGIKFTF  KDVYLEIGNN  DFTVCGYING720
IKEAEDKIEV  KRKSCIVNKT  VEIGMGNTTN  GNITYIKNKV  DNTIIGMGNK  LDFETPYIKI780
NSNSKTEGYI  LLNNLNLIST  GWSMYINGAF  YPDPNSNTKR  IFSDSNNEIL  EFYRINNDVN840
TSTNEYKISY  HGVDLRLTSE  ATTIIEKREL  LKLVITFDGK  SLKVYINGVL  NASKEVILIS900
GEYFKINNLM  FGNRYDLSRS  YNLKFSTLQF  YDGALTQEEI  NNL943

Predicted 3D structure by AlphaFold2 with pLDDT = 82.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPDIYDIQRE  KITKKCFDAI  LKEDISFLPQ  KFNSDYYKCL  SDVSEKIINI  FNNSSNAVQT60
NTINLNNGWD  FKKYGDTSTV  KINLPHQYDN  PRDRSSVLKG  KTIYSKNLFI  SDINKDSFKY120
YLQINSASFK  SEIFVNDISI  LTHNGSYENF  FADVTSNITS  GTNTIRIEID  NSNTGKNIIP180
LEADFSFVNG  IFRDVNLIKL  SDVYYSFDVY  GSTRTMIETS  NITVDSADLK  VKTVIKNISG240
KNKNLKVVYS  IFCNKKRIDT  HSDSFEMIDS  EIQVEQKFTI  LNPEIWDGLK  KGNLYNIQIC300
LYDSEKHVDT  INTSTGFRTV  SSNKDGFILN  GKTYPLRGIN  RHAENELNGF  AITKADHDTD360
FEMIKELGVN  AIRLAHYPQD  RYFIDKCNEY  GIVIYIEIPW  VNLYPSTDIN  DDLSNNIRFQ420
FKEMIKEYYN  YPCICFWGMH  NELTNDNNSS  GTKLINYTLC  KQLNNELYTY  AKNNGGNRLV480
GYATIDKTTH  EKEAGLNGDY  YGTNVYFGWY  NTDKIKNISE  YLDLKHATTN  DLIIFTEYGA540
GSNAMQFNLD  IETLNWGGIS  KDSNFSANGN  YHPQEYQCLI  HEGYLKSFLD  RNYINTFAWV600
FSDFAVSFRN  EGSQKALNDK  GFVTRDRKIK  KDVFYLYKAF  LNKNDKFVHI  NQKDFNIREN660
KNNTTNLTVY  SNCDFVTLIK  DNKIIDKQIA  DINLGIKFTF  KDVYLEIGNN  DFTVCGYING720
IKEAEDKIEV  KRKSCIVNKT  VEIGMGNTTN  GNITYIKNKV  DNTIIGMGNK  LDFETPYIKI780
NSNSKTEGYI  LLNNLNLIST  GWSMYINGAF  YPDPNSNTKR  IFSDSNNEIL  EFYRINNDVN840
TSTNEYKISY  HGVDLRLTSE  ATTIIEKREL  LKLVITFDGK  SLKVYINGVL  NASKEVILIS900
GEYFKINNLM  FGNRYDLSRS  YNLKFSTLQF  YDGALTQEEI  NNL943

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(44-690)

MPDIYDIQRE  KITKKCFDAI  LKEDISFLPQ  KFNSDYYKCL  SDVSEKIINI  FNNSSNAVQT60
NTINLNNGWD  FKKYGDTSTV  KINLPHQYDN  PRDRSSVLKG  KTIYSKNLFI  SDINKDSFKY120
YLQINSASFK  SEIFVNDISI  LTHNGSYENF  FADVTSNITS  GTNTIRIEID  NSNTGKNIIP180
LEADFSFVNG  IFRDVNLIKL  SDVYYSFDVY  GSTRTMIETS  NITVDSADLK  VKTVIKNISG240
KNKNLKVVYS  IFCNKKRIDT  HSDSFEMIDS  EIQVEQKFTI  LNPEIWDGLK  KGNLYNIQIC300
LYDSEKHVDT  INTSTGFRTV  SSNKDGFILN  GKTYPLRGIN  RHAENELNGF  AITKADHDTD360
FEMIKELGVN  AIRLAHYPQD  RYFIDKCNEY  GIVIYIEIPW  VNLYPSTDIN  DDLSNNIRFQ420
FKEMIKEYYN  YPCICFWGMH  NELTNDNNSS  GTKLINYTLC  KQLNNELYTY  AKNNGGNRLV480
GYATIDKTTH  EKEAGLNGDY  YGTNVYFGWY  NTDKIKNISE  YLDLKHATTN  DLIIFTEYGA540
GSNAMQFNLD  IETLNWGGIS  KDSNFSANGN  YHPQEYQCLI  HEGYLKSFLD  RNYINTFAWV600
FSDFAVSFRN  EGSQKALNDK  GFVTRDRKIK  KDVFYLYKAF  LNKNDKFVHI  NQKDFNIREN660
KNNTTNLTVY  SNCDFVTLIK  DNKIIDKQIA  DINLGIKFTF  KDVYLEIGNN  DFTVCGYING720
IKEAEDKIEV  KRKSCIVNKT  VEIGMGNTTN  GNITYIKNKV  DNTIIGMGNK  LDFETPYIKI780
NSNSKTEGYI  LLNNLNLIST  GWSMYINGAF  YPDPNSNTKR  IFSDSNNEIL  EFYRINNDVN840
TSTNEYKISY  HGVDLRLTSE  ATTIIEKREL  LKLVITFDGK  SLKVYINGVL  NASKEVILIS900
GEYFKINNLM  FGNRYDLSRS  YNLKFSTLQF  YDGALTQEEI  NNL943

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help