Information for CAZyme ID: APC97874.1
Basic Information
| GenBank ID | APC97874.1 |
| Family | AA10, CBM5, CBM73 |
| Sequence Length | 672 |
| UniProt ID | A0A1J0KW27(100,100) |
| Average pLDDT? | 80.68 |
| CAZy50 ID | 42115 |
| CAZy50 Rep | Yes, APC97874.1 |
| Structure Cluster | SC_AA10_clus12, SC_CBM5_clus18, SC_CBM5_clus3, SC_CBM73_clus12, SC_CBM73_clus4 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1542390 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Thiotrichales |
| Family | Francisellaceae |
| Genus | Francisella |
| Species | Francisella frigiditurris |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKLNKITLFM GLSLLVANQA YSHGYVESPA SRGYFCKLGE NKDCGRAQWE PQSIERTKGY | 60 |
| FNSGSLNNNM GSAGVSGFEP LDEQSKNRWA KTVIRPNQPH KFTWFFTANH KSNAFDFYIT | 120 |
| KADFDPNKPL TRDSFEKEPL HCYNPTPYWI APNQPAKDGQ SFTCDLPERS GYQIIMSEWE | 180 |
| VNDTVNSFYN LIDLEFSNAE TEGSIIKPGS SSDDDNGEIP AWSSNSTYAT PGTKVSHNGK | 240 |
| IYQNKWWAGS SDIPGQSAVW EEIQNIPDEP TPSDQFPVES FRLDINPTDL KEGDKVSLFV | 300 |
| FSQQNGSQEF DLITVPKSPD SGQLLKSIAE KINEISANSL NNKIIAGVKK NGVVSPSTEN | 360 |
| LMIYQTLGNT YSQVNLKHEI ADQNLINELH LMNVQDEYAI DDYGNIQINV SLMSHSSEPV | 420 |
| EASVTLLDSE DNPIKREDHI KINPYDTANV IWSIEDLEKG DYKLAFTSIL TGAPIWQETK | 480 |
| DIKIVDSEEE SNTPVNELHL MGALDEYTID SDGNVQINFN IMSHSSDQVK VTVKLLDSEK | 540 |
| NVVKIEKNIA INPNSSASLN WSLKGLQEGN YKLIIVSKLE GTKNWKQTKN IKILAYADEP | 600 |
| TPTPTPTPTP TPTPNDYPKY VAGTAYKAGD IVSNASGNYK CKPFPYSGWC SQAPSYYAPG | 660 |
| TGSDWADAWD KV | 672 |
Predicted 3D structure by AlphaFold2 with pLDDT = 80.68 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKLNKITLFM GLSLLVANQA YSHGYVESPA SRGYFCKLGE NKDCGRAQWE PQSIERTKGY | 60 |
| FNSGSLNNNM GSAGVSGFEP LDEQSKNRWA KTVIRPNQPH KFTWFFTANH KSNAFDFYIT | 120 |
| KADFDPNKPL TRDSFEKEPL HCYNPTPYWI APNQPAKDGQ SFTCDLPERS GYQIIMSEWE | 180 |
| VNDTVNSFYN LIDLEFSNAE TEGSIIKPGS SSDDDNGEIP AWSSNSTYAT PGTKVSHNGK | 240 |
| IYQNKWWAGS SDIPGQSAVW EEIQNIPDEP TPSDQFPVES FRLDINPTDL KEGDKVSLFV | 300 |
| FSQQNGSQEF DLITVPKSPD SGQLLKSIAE KINEISANSL NNKIIAGVKK NGVVSPSTEN | 360 |
| LMIYQTLGNT YSQVNLKHEI ADQNLINELH LMNVQDEYAI DDYGNIQINV SLMSHSSEPV | 420 |
| EASVTLLDSE DNPIKREDHI KINPYDTANV IWSIEDLEKG DYKLAFTSIL TGAPIWQETK | 480 |
| DIKIVDSEEE SNTPVNELHL MGALDEYTID SDGNVQINFN IMSHSSDQVK VTVKLLDSEK | 540 |
| NVVKIEKNIA INPNSSASLN WSLKGLQEGN YKLIIVSKLE GTKNWKQTKN IKILAYADEP | 600 |
| TPTPTPTPTP TPTPNDYPKY VAGTAYKAGD IVSNASGNYK CKPFPYSGWC SQAPSYYAPG | 660 |
| TGSDWADAWD KV | 672 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.